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Ferroptosis-Related Long Noncoding RNAs as Prognostic Marker for Colon Adenocarcinoma
BACKGROUND: The incidence of colon adenocarcinoma (COAD) has been increasing over time. Although ferroptosis and long noncoding RNAs (lncRNAs) have been extensively reported to participate in the tumorigenesis and development of COAD, few studies have investigated the role of ferroptosis-related lnc...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9012622/ https://www.ncbi.nlm.nih.gov/pubmed/35432591 http://dx.doi.org/10.1155/2022/5220368 |
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author | Qiu, Yuting Li, Haobo Zhang, Qian Qiao, Xinwei Wu, Jing |
author_facet | Qiu, Yuting Li, Haobo Zhang, Qian Qiao, Xinwei Wu, Jing |
author_sort | Qiu, Yuting |
collection | PubMed |
description | BACKGROUND: The incidence of colon adenocarcinoma (COAD) has been increasing over time. Although ferroptosis and long noncoding RNAs (lncRNAs) have been extensively reported to participate in the tumorigenesis and development of COAD, few studies have investigated the role of ferroptosis-related lncRNAs in the prognosis of COAD. METHODS: Gene-sequencing and clinical data for COAD were obtained from The Cancer Genome Atlas database. The coexpression network was constructed using known ferroptosis-related genes. Cox and least absolute shrinkage and selection operator regression were used to screen ferroptosis-related lncRNAs with prognostic value and to identify a predictive model of COAD. Patients with COAD were divided into low- and high-risk groups according to their risk score. Cases of COAD in the International Cancer Genome Consortium database were included as the testing cohort. RESULTS: In total, nine lncRNAs (LINC02381, AC105219.1, AC009283.1, LINC01011, ELFN1-AS1, EIF3J-DT, NKILA, LINC01063, and SNHG16) were considered prognostic factors for COAD. Then, a risk score model was established. The overall survival rate of COAD patients was negatively associated with the risk score. Kaplan–Meier analyses in the original and testing cohorts showed similar results. The expression of the lncRNAs in tissue was consistent with the risk score, and the relationship with tumor mutation burden, immunity, and drug sensitivity presented a marked link between the signature and COAD. A nomogram was established for clinical applications. CONCLUSIONS: Nine ferroptosis-related lncRNAs and the established signature have a certain predictive value for prognosis of COAD patients and can be used as potential research targets for exploring treatment of COAD. |
format | Online Article Text |
id | pubmed-9012622 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-90126222022-04-16 Ferroptosis-Related Long Noncoding RNAs as Prognostic Marker for Colon Adenocarcinoma Qiu, Yuting Li, Haobo Zhang, Qian Qiao, Xinwei Wu, Jing Appl Bionics Biomech Research Article BACKGROUND: The incidence of colon adenocarcinoma (COAD) has been increasing over time. Although ferroptosis and long noncoding RNAs (lncRNAs) have been extensively reported to participate in the tumorigenesis and development of COAD, few studies have investigated the role of ferroptosis-related lncRNAs in the prognosis of COAD. METHODS: Gene-sequencing and clinical data for COAD were obtained from The Cancer Genome Atlas database. The coexpression network was constructed using known ferroptosis-related genes. Cox and least absolute shrinkage and selection operator regression were used to screen ferroptosis-related lncRNAs with prognostic value and to identify a predictive model of COAD. Patients with COAD were divided into low- and high-risk groups according to their risk score. Cases of COAD in the International Cancer Genome Consortium database were included as the testing cohort. RESULTS: In total, nine lncRNAs (LINC02381, AC105219.1, AC009283.1, LINC01011, ELFN1-AS1, EIF3J-DT, NKILA, LINC01063, and SNHG16) were considered prognostic factors for COAD. Then, a risk score model was established. The overall survival rate of COAD patients was negatively associated with the risk score. Kaplan–Meier analyses in the original and testing cohorts showed similar results. The expression of the lncRNAs in tissue was consistent with the risk score, and the relationship with tumor mutation burden, immunity, and drug sensitivity presented a marked link between the signature and COAD. A nomogram was established for clinical applications. CONCLUSIONS: Nine ferroptosis-related lncRNAs and the established signature have a certain predictive value for prognosis of COAD patients and can be used as potential research targets for exploring treatment of COAD. Hindawi 2022-04-08 /pmc/articles/PMC9012622/ /pubmed/35432591 http://dx.doi.org/10.1155/2022/5220368 Text en Copyright © 2022 Yuting Qiu et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Qiu, Yuting Li, Haobo Zhang, Qian Qiao, Xinwei Wu, Jing Ferroptosis-Related Long Noncoding RNAs as Prognostic Marker for Colon Adenocarcinoma |
title | Ferroptosis-Related Long Noncoding RNAs as Prognostic Marker for Colon Adenocarcinoma |
title_full | Ferroptosis-Related Long Noncoding RNAs as Prognostic Marker for Colon Adenocarcinoma |
title_fullStr | Ferroptosis-Related Long Noncoding RNAs as Prognostic Marker for Colon Adenocarcinoma |
title_full_unstemmed | Ferroptosis-Related Long Noncoding RNAs as Prognostic Marker for Colon Adenocarcinoma |
title_short | Ferroptosis-Related Long Noncoding RNAs as Prognostic Marker for Colon Adenocarcinoma |
title_sort | ferroptosis-related long noncoding rnas as prognostic marker for colon adenocarcinoma |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9012622/ https://www.ncbi.nlm.nih.gov/pubmed/35432591 http://dx.doi.org/10.1155/2022/5220368 |
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