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Identifying Key Biomarkers and Immune Infiltration in Female Patients with Ischemic Stroke Based on Weighted Gene Co-Expression Network Analysis

Stroke is one of the leading causes of death and disability worldwide. Evidence shows that ischemic stroke (IS) accounts for nearly 80 percent of all strokes and that the etiology, risk factors, and prognosis of this disease differ by gender. Female patients may bear a greater burden than male patie...

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Autores principales: Xu, Haipeng, He, Kelin, Hu, Rong, Ge, YanZhi, Li, Xinyun, Ni, Fengjia, Que, Bei, Chen, Yi, Ma, Ruijie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9012649/
https://www.ncbi.nlm.nih.gov/pubmed/35432523
http://dx.doi.org/10.1155/2022/5379876
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author Xu, Haipeng
He, Kelin
Hu, Rong
Ge, YanZhi
Li, Xinyun
Ni, Fengjia
Que, Bei
Chen, Yi
Ma, Ruijie
author_facet Xu, Haipeng
He, Kelin
Hu, Rong
Ge, YanZhi
Li, Xinyun
Ni, Fengjia
Que, Bei
Chen, Yi
Ma, Ruijie
author_sort Xu, Haipeng
collection PubMed
description Stroke is one of the leading causes of death and disability worldwide. Evidence shows that ischemic stroke (IS) accounts for nearly 80 percent of all strokes and that the etiology, risk factors, and prognosis of this disease differ by gender. Female patients may bear a greater burden than male patients. The immune system may play an important role in the pathophysiology of females with IS. Therefore, it is critical to investigate the key biomarkers and immune infiltration of female IS patients to develop effective treatment methods. Herein, we used weighted gene co-expression network analysis (WGCNA) to determine the key modules and core genes in female IS patients using the GSE22255, GSE37587, and GSE16561 datasets from the GEO database. Subsequently, we performed functional enrichment analysis and built a protein-protein interaction (PPI) network. Ten genes were selected as the true central genes for further investigation. After that, we explored the specific molecular and biological functions of these hub genes to gain a better understanding of the underlying pathogenesis of female IS patients. Moreover, the “Cell type Identification by Estimating Relative Subsets of RNA Transcripts (CIBERSORT)” was used to examine the distribution pattern of immune subtypes in female patients with IS and normal controls, revealing a new potential target for clinical treatment of the disease.
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spelling pubmed-90126492022-04-16 Identifying Key Biomarkers and Immune Infiltration in Female Patients with Ischemic Stroke Based on Weighted Gene Co-Expression Network Analysis Xu, Haipeng He, Kelin Hu, Rong Ge, YanZhi Li, Xinyun Ni, Fengjia Que, Bei Chen, Yi Ma, Ruijie Neural Plast Research Article Stroke is one of the leading causes of death and disability worldwide. Evidence shows that ischemic stroke (IS) accounts for nearly 80 percent of all strokes and that the etiology, risk factors, and prognosis of this disease differ by gender. Female patients may bear a greater burden than male patients. The immune system may play an important role in the pathophysiology of females with IS. Therefore, it is critical to investigate the key biomarkers and immune infiltration of female IS patients to develop effective treatment methods. Herein, we used weighted gene co-expression network analysis (WGCNA) to determine the key modules and core genes in female IS patients using the GSE22255, GSE37587, and GSE16561 datasets from the GEO database. Subsequently, we performed functional enrichment analysis and built a protein-protein interaction (PPI) network. Ten genes were selected as the true central genes for further investigation. After that, we explored the specific molecular and biological functions of these hub genes to gain a better understanding of the underlying pathogenesis of female IS patients. Moreover, the “Cell type Identification by Estimating Relative Subsets of RNA Transcripts (CIBERSORT)” was used to examine the distribution pattern of immune subtypes in female patients with IS and normal controls, revealing a new potential target for clinical treatment of the disease. Hindawi 2022-04-08 /pmc/articles/PMC9012649/ /pubmed/35432523 http://dx.doi.org/10.1155/2022/5379876 Text en Copyright © 2022 Haipeng Xu et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Xu, Haipeng
He, Kelin
Hu, Rong
Ge, YanZhi
Li, Xinyun
Ni, Fengjia
Que, Bei
Chen, Yi
Ma, Ruijie
Identifying Key Biomarkers and Immune Infiltration in Female Patients with Ischemic Stroke Based on Weighted Gene Co-Expression Network Analysis
title Identifying Key Biomarkers and Immune Infiltration in Female Patients with Ischemic Stroke Based on Weighted Gene Co-Expression Network Analysis
title_full Identifying Key Biomarkers and Immune Infiltration in Female Patients with Ischemic Stroke Based on Weighted Gene Co-Expression Network Analysis
title_fullStr Identifying Key Biomarkers and Immune Infiltration in Female Patients with Ischemic Stroke Based on Weighted Gene Co-Expression Network Analysis
title_full_unstemmed Identifying Key Biomarkers and Immune Infiltration in Female Patients with Ischemic Stroke Based on Weighted Gene Co-Expression Network Analysis
title_short Identifying Key Biomarkers and Immune Infiltration in Female Patients with Ischemic Stroke Based on Weighted Gene Co-Expression Network Analysis
title_sort identifying key biomarkers and immune infiltration in female patients with ischemic stroke based on weighted gene co-expression network analysis
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9012649/
https://www.ncbi.nlm.nih.gov/pubmed/35432523
http://dx.doi.org/10.1155/2022/5379876
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