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Evaluation of the correctable decoding sequencing as a new powerful strategy for DNA sequencing

Next-generation sequencing (NGS) promises to revolutionize precision medicine, but the existing sequencing technologies are limited in accuracy. To overcome this limitation, we propose the correctable decoding sequencing strategy, which is a duplex sequencing protocol with conservative theoretical e...

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Autores principales: Cheng, Chu, Xiao, Pengfeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Life Science Alliance LLC 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9012935/
https://www.ncbi.nlm.nih.gov/pubmed/35422436
http://dx.doi.org/10.26508/lsa.202101294
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author Cheng, Chu
Xiao, Pengfeng
author_facet Cheng, Chu
Xiao, Pengfeng
author_sort Cheng, Chu
collection PubMed
description Next-generation sequencing (NGS) promises to revolutionize precision medicine, but the existing sequencing technologies are limited in accuracy. To overcome this limitation, we propose the correctable decoding sequencing strategy, which is a duplex sequencing protocol with conservative theoretical error rates of 0.0009%. This rate is lower than that for Sanger sequencing. Here, we simulate the sequencing reactions by the self-developed software, and find that this approach has great potential in NGS in terms of sequence decoding, reassembly, error correction, and sequencing accuracy. Besides, this approach can be compatible with most SBS-based sequencing platforms, and also has the ability to compensate for some of the shortcomings of NGS platforms, thereby broadening its application for researchers. Hopefully, it can provide a powerful new protocol that can be used as an alternative to the existing NGS platforms, enabling accurate identification of rare mutations in a variety of applications in biology and medicine.
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spelling pubmed-90129352022-05-04 Evaluation of the correctable decoding sequencing as a new powerful strategy for DNA sequencing Cheng, Chu Xiao, Pengfeng Life Sci Alliance Methods Next-generation sequencing (NGS) promises to revolutionize precision medicine, but the existing sequencing technologies are limited in accuracy. To overcome this limitation, we propose the correctable decoding sequencing strategy, which is a duplex sequencing protocol with conservative theoretical error rates of 0.0009%. This rate is lower than that for Sanger sequencing. Here, we simulate the sequencing reactions by the self-developed software, and find that this approach has great potential in NGS in terms of sequence decoding, reassembly, error correction, and sequencing accuracy. Besides, this approach can be compatible with most SBS-based sequencing platforms, and also has the ability to compensate for some of the shortcomings of NGS platforms, thereby broadening its application for researchers. Hopefully, it can provide a powerful new protocol that can be used as an alternative to the existing NGS platforms, enabling accurate identification of rare mutations in a variety of applications in biology and medicine. Life Science Alliance LLC 2022-04-14 /pmc/articles/PMC9012935/ /pubmed/35422436 http://dx.doi.org/10.26508/lsa.202101294 Text en © 2022 Cheng and Xiao https://creativecommons.org/licenses/by/4.0/This article is available under a Creative Commons License (Attribution 4.0 International, as described at https://creativecommons.org/licenses/by/4.0/).
spellingShingle Methods
Cheng, Chu
Xiao, Pengfeng
Evaluation of the correctable decoding sequencing as a new powerful strategy for DNA sequencing
title Evaluation of the correctable decoding sequencing as a new powerful strategy for DNA sequencing
title_full Evaluation of the correctable decoding sequencing as a new powerful strategy for DNA sequencing
title_fullStr Evaluation of the correctable decoding sequencing as a new powerful strategy for DNA sequencing
title_full_unstemmed Evaluation of the correctable decoding sequencing as a new powerful strategy for DNA sequencing
title_short Evaluation of the correctable decoding sequencing as a new powerful strategy for DNA sequencing
title_sort evaluation of the correctable decoding sequencing as a new powerful strategy for dna sequencing
topic Methods
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9012935/
https://www.ncbi.nlm.nih.gov/pubmed/35422436
http://dx.doi.org/10.26508/lsa.202101294
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