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Guanosine Dianions Hydrated by One to Four Water Molecules
[Image: see text] Intermolecular interactions such as those present in molecule···water complexes may profoundly influence the physicochemical properties of molecules. Here, we carried out an experimental–computational study on doubly deprotonated guanosine monophosphate···water clusters, [dGMP – 2H...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9014458/ https://www.ncbi.nlm.nih.gov/pubmed/35380844 http://dx.doi.org/10.1021/acs.jpclett.2c00512 |
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author | Makurat, Samanta Yuan, Qinqin Czub, Jacek Chomicz-Mańka, Lidia Cao, Wenjin Wang, Xue-Bin Rak, Janusz |
author_facet | Makurat, Samanta Yuan, Qinqin Czub, Jacek Chomicz-Mańka, Lidia Cao, Wenjin Wang, Xue-Bin Rak, Janusz |
author_sort | Makurat, Samanta |
collection | PubMed |
description | [Image: see text] Intermolecular interactions such as those present in molecule···water complexes may profoundly influence the physicochemical properties of molecules. Here, we carried out an experimental–computational study on doubly deprotonated guanosine monophosphate···water clusters, [dGMP – 2H](2–)·nH(2)O (n = 1–4), using a combination of negative anion photoelectron spectroscopy (NIPES) with molecular dynamics (MD) and quantum chemical (QM) calculations. Successive addition of water molecules to [dGMP – 2H](2–) increases the experimental adiabatic detachment (ADE) and vertical detachment energy (VDE) by 0.5–0.1 eV, depending on the cluster size. In order to choose the representative conformations, we combined MD simulations with a clustering procedure to identify low energy geometries for which ADEs and VDEs were computed at the CAM-B3LYP/6-31++G(d,p) level. Our results demonstrate that the assumed approach leads to sound geometries and energetics of the studied microsolvates since the calculated ADEs and VDEs are in pretty good agreement with the experimental characteristics. The evolution of hydrogen bonding with cluster size indicates the possibility of the occurrence of proton transfer for clusters comprising a larger number of water molecules. |
format | Online Article Text |
id | pubmed-9014458 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-90144582022-04-19 Guanosine Dianions Hydrated by One to Four Water Molecules Makurat, Samanta Yuan, Qinqin Czub, Jacek Chomicz-Mańka, Lidia Cao, Wenjin Wang, Xue-Bin Rak, Janusz J Phys Chem Lett [Image: see text] Intermolecular interactions such as those present in molecule···water complexes may profoundly influence the physicochemical properties of molecules. Here, we carried out an experimental–computational study on doubly deprotonated guanosine monophosphate···water clusters, [dGMP – 2H](2–)·nH(2)O (n = 1–4), using a combination of negative anion photoelectron spectroscopy (NIPES) with molecular dynamics (MD) and quantum chemical (QM) calculations. Successive addition of water molecules to [dGMP – 2H](2–) increases the experimental adiabatic detachment (ADE) and vertical detachment energy (VDE) by 0.5–0.1 eV, depending on the cluster size. In order to choose the representative conformations, we combined MD simulations with a clustering procedure to identify low energy geometries for which ADEs and VDEs were computed at the CAM-B3LYP/6-31++G(d,p) level. Our results demonstrate that the assumed approach leads to sound geometries and energetics of the studied microsolvates since the calculated ADEs and VDEs are in pretty good agreement with the experimental characteristics. The evolution of hydrogen bonding with cluster size indicates the possibility of the occurrence of proton transfer for clusters comprising a larger number of water molecules. American Chemical Society 2022-04-05 2022-04-14 /pmc/articles/PMC9014458/ /pubmed/35380844 http://dx.doi.org/10.1021/acs.jpclett.2c00512 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Makurat, Samanta Yuan, Qinqin Czub, Jacek Chomicz-Mańka, Lidia Cao, Wenjin Wang, Xue-Bin Rak, Janusz Guanosine Dianions Hydrated by One to Four Water Molecules |
title | Guanosine Dianions Hydrated by One to Four Water Molecules |
title_full | Guanosine Dianions Hydrated by One to Four Water Molecules |
title_fullStr | Guanosine Dianions Hydrated by One to Four Water Molecules |
title_full_unstemmed | Guanosine Dianions Hydrated by One to Four Water Molecules |
title_short | Guanosine Dianions Hydrated by One to Four Water Molecules |
title_sort | guanosine dianions hydrated by one to four water molecules |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9014458/ https://www.ncbi.nlm.nih.gov/pubmed/35380844 http://dx.doi.org/10.1021/acs.jpclett.2c00512 |
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