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ADRAM is an experience-dependent long noncoding RNA that drives fear extinction through a direct interaction with the chaperone protein 14-3-3
Here, we used RNA capture-seq to identify a large population of lncRNAs that are expressed in the infralimbic prefrontal cortex of adult male mice in response to fear-related learning. Combining these data with cell-type-specific ATAC-seq on neurons that had been selectively activated by fear extinc...
Autores principales: | , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9015815/ https://www.ncbi.nlm.nih.gov/pubmed/35320727 http://dx.doi.org/10.1016/j.celrep.2022.110546 |
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author | Wei, Wei Zhao, Qiongyi Wang, Ziqi Liau, Wei-Siang Basic, Dean Ren, Haobin Marshall, Paul R. Zajaczkowski, Esmi L. Leighton, Laura J. Madugalle, Sachithrani U. Musgrove, Mason Periyakaruppiah, Ambika Shi, Jichun Zhang, Jianjian Mattick, John S. Mercer, Timothy R. Spitale, Robert C. Li, Xiang Bredy, Timothy W. |
author_facet | Wei, Wei Zhao, Qiongyi Wang, Ziqi Liau, Wei-Siang Basic, Dean Ren, Haobin Marshall, Paul R. Zajaczkowski, Esmi L. Leighton, Laura J. Madugalle, Sachithrani U. Musgrove, Mason Periyakaruppiah, Ambika Shi, Jichun Zhang, Jianjian Mattick, John S. Mercer, Timothy R. Spitale, Robert C. Li, Xiang Bredy, Timothy W. |
author_sort | Wei, Wei |
collection | PubMed |
description | Here, we used RNA capture-seq to identify a large population of lncRNAs that are expressed in the infralimbic prefrontal cortex of adult male mice in response to fear-related learning. Combining these data with cell-type-specific ATAC-seq on neurons that had been selectively activated by fear extinction learning, we find inducible 434 lncRNAs that are derived from enhancer regions in the vicinity of protein-coding genes. In particular, we discover an experience-induced lncRNA we call ADRAM (activity-dependent lncRNA associated with memory) that acts as both a scaffold and a combinatorial guide to recruit the brain-enriched chaperone protein 14-3-3 to the promoter of the memory-associated immediate-early gene Nr4a2 and is required fear extinction memory. This study expands the lexicon of experience-dependent lncRNA activity in the brain and highlights enhancer-derived RNAs (eRNAs) as key players in the epigenomic regulation of gene expression associated with the formation of fear extinction memory. |
format | Online Article Text |
id | pubmed-9015815 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
record_format | MEDLINE/PubMed |
spelling | pubmed-90158152022-04-18 ADRAM is an experience-dependent long noncoding RNA that drives fear extinction through a direct interaction with the chaperone protein 14-3-3 Wei, Wei Zhao, Qiongyi Wang, Ziqi Liau, Wei-Siang Basic, Dean Ren, Haobin Marshall, Paul R. Zajaczkowski, Esmi L. Leighton, Laura J. Madugalle, Sachithrani U. Musgrove, Mason Periyakaruppiah, Ambika Shi, Jichun Zhang, Jianjian Mattick, John S. Mercer, Timothy R. Spitale, Robert C. Li, Xiang Bredy, Timothy W. Cell Rep Article Here, we used RNA capture-seq to identify a large population of lncRNAs that are expressed in the infralimbic prefrontal cortex of adult male mice in response to fear-related learning. Combining these data with cell-type-specific ATAC-seq on neurons that had been selectively activated by fear extinction learning, we find inducible 434 lncRNAs that are derived from enhancer regions in the vicinity of protein-coding genes. In particular, we discover an experience-induced lncRNA we call ADRAM (activity-dependent lncRNA associated with memory) that acts as both a scaffold and a combinatorial guide to recruit the brain-enriched chaperone protein 14-3-3 to the promoter of the memory-associated immediate-early gene Nr4a2 and is required fear extinction memory. This study expands the lexicon of experience-dependent lncRNA activity in the brain and highlights enhancer-derived RNAs (eRNAs) as key players in the epigenomic regulation of gene expression associated with the formation of fear extinction memory. 2022-03-22 /pmc/articles/PMC9015815/ /pubmed/35320727 http://dx.doi.org/10.1016/j.celrep.2022.110546 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) ). |
spellingShingle | Article Wei, Wei Zhao, Qiongyi Wang, Ziqi Liau, Wei-Siang Basic, Dean Ren, Haobin Marshall, Paul R. Zajaczkowski, Esmi L. Leighton, Laura J. Madugalle, Sachithrani U. Musgrove, Mason Periyakaruppiah, Ambika Shi, Jichun Zhang, Jianjian Mattick, John S. Mercer, Timothy R. Spitale, Robert C. Li, Xiang Bredy, Timothy W. ADRAM is an experience-dependent long noncoding RNA that drives fear extinction through a direct interaction with the chaperone protein 14-3-3 |
title | ADRAM is an experience-dependent long noncoding RNA that drives fear extinction through a direct interaction with the chaperone protein 14-3-3 |
title_full | ADRAM is an experience-dependent long noncoding RNA that drives fear extinction through a direct interaction with the chaperone protein 14-3-3 |
title_fullStr | ADRAM is an experience-dependent long noncoding RNA that drives fear extinction through a direct interaction with the chaperone protein 14-3-3 |
title_full_unstemmed | ADRAM is an experience-dependent long noncoding RNA that drives fear extinction through a direct interaction with the chaperone protein 14-3-3 |
title_short | ADRAM is an experience-dependent long noncoding RNA that drives fear extinction through a direct interaction with the chaperone protein 14-3-3 |
title_sort | adram is an experience-dependent long noncoding rna that drives fear extinction through a direct interaction with the chaperone protein 14-3-3 |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9015815/ https://www.ncbi.nlm.nih.gov/pubmed/35320727 http://dx.doi.org/10.1016/j.celrep.2022.110546 |
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