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ADRAM is an experience-dependent long noncoding RNA that drives fear extinction through a direct interaction with the chaperone protein 14-3-3

Here, we used RNA capture-seq to identify a large population of lncRNAs that are expressed in the infralimbic prefrontal cortex of adult male mice in response to fear-related learning. Combining these data with cell-type-specific ATAC-seq on neurons that had been selectively activated by fear extinc...

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Autores principales: Wei, Wei, Zhao, Qiongyi, Wang, Ziqi, Liau, Wei-Siang, Basic, Dean, Ren, Haobin, Marshall, Paul R., Zajaczkowski, Esmi L., Leighton, Laura J., Madugalle, Sachithrani U., Musgrove, Mason, Periyakaruppiah, Ambika, Shi, Jichun, Zhang, Jianjian, Mattick, John S., Mercer, Timothy R., Spitale, Robert C., Li, Xiang, Bredy, Timothy W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9015815/
https://www.ncbi.nlm.nih.gov/pubmed/35320727
http://dx.doi.org/10.1016/j.celrep.2022.110546
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author Wei, Wei
Zhao, Qiongyi
Wang, Ziqi
Liau, Wei-Siang
Basic, Dean
Ren, Haobin
Marshall, Paul R.
Zajaczkowski, Esmi L.
Leighton, Laura J.
Madugalle, Sachithrani U.
Musgrove, Mason
Periyakaruppiah, Ambika
Shi, Jichun
Zhang, Jianjian
Mattick, John S.
Mercer, Timothy R.
Spitale, Robert C.
Li, Xiang
Bredy, Timothy W.
author_facet Wei, Wei
Zhao, Qiongyi
Wang, Ziqi
Liau, Wei-Siang
Basic, Dean
Ren, Haobin
Marshall, Paul R.
Zajaczkowski, Esmi L.
Leighton, Laura J.
Madugalle, Sachithrani U.
Musgrove, Mason
Periyakaruppiah, Ambika
Shi, Jichun
Zhang, Jianjian
Mattick, John S.
Mercer, Timothy R.
Spitale, Robert C.
Li, Xiang
Bredy, Timothy W.
author_sort Wei, Wei
collection PubMed
description Here, we used RNA capture-seq to identify a large population of lncRNAs that are expressed in the infralimbic prefrontal cortex of adult male mice in response to fear-related learning. Combining these data with cell-type-specific ATAC-seq on neurons that had been selectively activated by fear extinction learning, we find inducible 434 lncRNAs that are derived from enhancer regions in the vicinity of protein-coding genes. In particular, we discover an experience-induced lncRNA we call ADRAM (activity-dependent lncRNA associated with memory) that acts as both a scaffold and a combinatorial guide to recruit the brain-enriched chaperone protein 14-3-3 to the promoter of the memory-associated immediate-early gene Nr4a2 and is required fear extinction memory. This study expands the lexicon of experience-dependent lncRNA activity in the brain and highlights enhancer-derived RNAs (eRNAs) as key players in the epigenomic regulation of gene expression associated with the formation of fear extinction memory.
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spelling pubmed-90158152022-04-18 ADRAM is an experience-dependent long noncoding RNA that drives fear extinction through a direct interaction with the chaperone protein 14-3-3 Wei, Wei Zhao, Qiongyi Wang, Ziqi Liau, Wei-Siang Basic, Dean Ren, Haobin Marshall, Paul R. Zajaczkowski, Esmi L. Leighton, Laura J. Madugalle, Sachithrani U. Musgrove, Mason Periyakaruppiah, Ambika Shi, Jichun Zhang, Jianjian Mattick, John S. Mercer, Timothy R. Spitale, Robert C. Li, Xiang Bredy, Timothy W. Cell Rep Article Here, we used RNA capture-seq to identify a large population of lncRNAs that are expressed in the infralimbic prefrontal cortex of adult male mice in response to fear-related learning. Combining these data with cell-type-specific ATAC-seq on neurons that had been selectively activated by fear extinction learning, we find inducible 434 lncRNAs that are derived from enhancer regions in the vicinity of protein-coding genes. In particular, we discover an experience-induced lncRNA we call ADRAM (activity-dependent lncRNA associated with memory) that acts as both a scaffold and a combinatorial guide to recruit the brain-enriched chaperone protein 14-3-3 to the promoter of the memory-associated immediate-early gene Nr4a2 and is required fear extinction memory. This study expands the lexicon of experience-dependent lncRNA activity in the brain and highlights enhancer-derived RNAs (eRNAs) as key players in the epigenomic regulation of gene expression associated with the formation of fear extinction memory. 2022-03-22 /pmc/articles/PMC9015815/ /pubmed/35320727 http://dx.doi.org/10.1016/j.celrep.2022.110546 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) ).
spellingShingle Article
Wei, Wei
Zhao, Qiongyi
Wang, Ziqi
Liau, Wei-Siang
Basic, Dean
Ren, Haobin
Marshall, Paul R.
Zajaczkowski, Esmi L.
Leighton, Laura J.
Madugalle, Sachithrani U.
Musgrove, Mason
Periyakaruppiah, Ambika
Shi, Jichun
Zhang, Jianjian
Mattick, John S.
Mercer, Timothy R.
Spitale, Robert C.
Li, Xiang
Bredy, Timothy W.
ADRAM is an experience-dependent long noncoding RNA that drives fear extinction through a direct interaction with the chaperone protein 14-3-3
title ADRAM is an experience-dependent long noncoding RNA that drives fear extinction through a direct interaction with the chaperone protein 14-3-3
title_full ADRAM is an experience-dependent long noncoding RNA that drives fear extinction through a direct interaction with the chaperone protein 14-3-3
title_fullStr ADRAM is an experience-dependent long noncoding RNA that drives fear extinction through a direct interaction with the chaperone protein 14-3-3
title_full_unstemmed ADRAM is an experience-dependent long noncoding RNA that drives fear extinction through a direct interaction with the chaperone protein 14-3-3
title_short ADRAM is an experience-dependent long noncoding RNA that drives fear extinction through a direct interaction with the chaperone protein 14-3-3
title_sort adram is an experience-dependent long noncoding rna that drives fear extinction through a direct interaction with the chaperone protein 14-3-3
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9015815/
https://www.ncbi.nlm.nih.gov/pubmed/35320727
http://dx.doi.org/10.1016/j.celrep.2022.110546
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