New Data and New Features of the FunRiceGenes (Functionally Characterized Rice Genes) Database: 2021 Update

As a major food crop and model organism, rice has been mostly studied with the largest number of functionally characterized genes among all crops. We previously built the funRiceGenes database including ~ 2800 functionally characterized rice genes and ~ 5000 members of different gene families. Since...

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Autores principales: Huang, Fangfang, Jiang, Yingru, Chen, Tiantian, Li, Haoran, Fu, Mengjia, Wang, Yazhou, Xu, Yufang, Li, Yang, Zhou, Zhengfu, Jia, Lihua, Ouyang, Yidan, Yao, Wen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2022
Materias:
Research
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9018921/
https://www.ncbi.nlm.nih.gov/pubmed/35438356
http://dx.doi.org/10.1186/s12284-022-00569-1
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author Huang, Fangfang
Jiang, Yingru
Chen, Tiantian
Li, Haoran
Fu, Mengjia
Wang, Yazhou
Xu, Yufang
Li, Yang
Zhou, Zhengfu
Jia, Lihua
Ouyang, Yidan
Yao, Wen
author_facet Huang, Fangfang
Jiang, Yingru
Chen, Tiantian
Li, Haoran
Fu, Mengjia
Wang, Yazhou
Xu, Yufang
Li, Yang
Zhou, Zhengfu
Jia, Lihua
Ouyang, Yidan
Yao, Wen
author_sort Huang, Fangfang
collection PubMed
description As a major food crop and model organism, rice has been mostly studied with the largest number of functionally characterized genes among all crops. We previously built the funRiceGenes database including ~ 2800 functionally characterized rice genes and ~ 5000 members of different gene families. Since being published, the funRiceGenes database has been accessed by more than 54,400 users with over 540,000 pageviews. The funRiceGenes database has been continuously updated with newly cloned rice genes and newly published literature, based on the progress of rice functional genomics studies. Up to Nov 2021, ~ 4100 functionally characterized rice genes and ~ 6000 members of different gene families were collected in funRiceGenes, accounting for 22.3% of the 39,045 annotated protein-coding genes in the rice genome. Here, we summarized the update of the funRiceGenes database with new data and new features in the last 5 years.
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spelling pubmed-90189212022-05-06 New Data and New Features of the FunRiceGenes (Functionally Characterized Rice Genes) Database: 2021 Update Huang, Fangfang Jiang, Yingru Chen, Tiantian Li, Haoran Fu, Mengjia Wang, Yazhou Xu, Yufang Li, Yang Zhou, Zhengfu Jia, Lihua Ouyang, Yidan Yao, Wen Rice (N Y) Research As a major food crop and model organism, rice has been mostly studied with the largest number of functionally characterized genes among all crops. We previously built the funRiceGenes database including ~ 2800 functionally characterized rice genes and ~ 5000 members of different gene families. Since being published, the funRiceGenes database has been accessed by more than 54,400 users with over 540,000 pageviews. The funRiceGenes database has been continuously updated with newly cloned rice genes and newly published literature, based on the progress of rice functional genomics studies. Up to Nov 2021, ~ 4100 functionally characterized rice genes and ~ 6000 members of different gene families were collected in funRiceGenes, accounting for 22.3% of the 39,045 annotated protein-coding genes in the rice genome. Here, we summarized the update of the funRiceGenes database with new data and new features in the last 5 years. Springer US 2022-04-19 /pmc/articles/PMC9018921/ /pubmed/35438356 http://dx.doi.org/10.1186/s12284-022-00569-1 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Research
Huang, Fangfang
Jiang, Yingru
Chen, Tiantian
Li, Haoran
Fu, Mengjia
Wang, Yazhou
Xu, Yufang
Li, Yang
Zhou, Zhengfu
Jia, Lihua
Ouyang, Yidan
Yao, Wen
New Data and New Features of the FunRiceGenes (Functionally Characterized Rice Genes) Database: 2021 Update
title New Data and New Features of the FunRiceGenes (Functionally Characterized Rice Genes) Database: 2021 Update
title_full New Data and New Features of the FunRiceGenes (Functionally Characterized Rice Genes) Database: 2021 Update
title_fullStr New Data and New Features of the FunRiceGenes (Functionally Characterized Rice Genes) Database: 2021 Update
title_full_unstemmed New Data and New Features of the FunRiceGenes (Functionally Characterized Rice Genes) Database: 2021 Update
title_short New Data and New Features of the FunRiceGenes (Functionally Characterized Rice Genes) Database: 2021 Update
title_sort new data and new features of the funricegenes (functionally characterized rice genes) database: 2021 update
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9018921/
https://www.ncbi.nlm.nih.gov/pubmed/35438356
http://dx.doi.org/10.1186/s12284-022-00569-1
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