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The ProkaBioDen database, a global database of benthic prokaryotic biomasses and densities in the marine realm

Benthic prokaryotes include Bacteria and Archaea and dominate densities of marine benthos. They play major roles in element cycles and heterotrophic, chemoautotrophic, and phototrophic carbon production. To understand how anthropogenic disturbances and climate change might affect these processes, be...

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Autor principal: Stratmann, Tanja
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9019028/
https://www.ncbi.nlm.nih.gov/pubmed/35440731
http://dx.doi.org/10.1038/s41597-022-01281-x
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author Stratmann, Tanja
author_facet Stratmann, Tanja
author_sort Stratmann, Tanja
collection PubMed
description Benthic prokaryotes include Bacteria and Archaea and dominate densities of marine benthos. They play major roles in element cycles and heterotrophic, chemoautotrophic, and phototrophic carbon production. To understand how anthropogenic disturbances and climate change might affect these processes, better estimates of prokaryotic biomasses and densities are required. Hence, I developed the ProkaBioDen database, the largest open-access database of benthic prokaryotic biomasses and densities in marine surface sediments. In total, the database comprises 1,089 georeferenced benthic prokaryotic biomass and 1,875 density records extracted from 85 and 112 studies, respectively. I identified all references applying the procedures for systematic reviews and meta analyses and report prokaryotic biomasses as g C cm(−3) sediment, g C g(−1) sediment, and g C m(−2). Density records are presented as cell cm(−3) sediment, cell g(−1) sediment/ sulfide/ vent precipitate, and cell m(−2). This database should serve as reference to close sampling gaps in the future.
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spelling pubmed-90190282022-04-28 The ProkaBioDen database, a global database of benthic prokaryotic biomasses and densities in the marine realm Stratmann, Tanja Sci Data Data Descriptor Benthic prokaryotes include Bacteria and Archaea and dominate densities of marine benthos. They play major roles in element cycles and heterotrophic, chemoautotrophic, and phototrophic carbon production. To understand how anthropogenic disturbances and climate change might affect these processes, better estimates of prokaryotic biomasses and densities are required. Hence, I developed the ProkaBioDen database, the largest open-access database of benthic prokaryotic biomasses and densities in marine surface sediments. In total, the database comprises 1,089 georeferenced benthic prokaryotic biomass and 1,875 density records extracted from 85 and 112 studies, respectively. I identified all references applying the procedures for systematic reviews and meta analyses and report prokaryotic biomasses as g C cm(−3) sediment, g C g(−1) sediment, and g C m(−2). Density records are presented as cell cm(−3) sediment, cell g(−1) sediment/ sulfide/ vent precipitate, and cell m(−2). This database should serve as reference to close sampling gaps in the future. Nature Publishing Group UK 2022-04-19 /pmc/articles/PMC9019028/ /pubmed/35440731 http://dx.doi.org/10.1038/s41597-022-01281-x Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Stratmann, Tanja
The ProkaBioDen database, a global database of benthic prokaryotic biomasses and densities in the marine realm
title The ProkaBioDen database, a global database of benthic prokaryotic biomasses and densities in the marine realm
title_full The ProkaBioDen database, a global database of benthic prokaryotic biomasses and densities in the marine realm
title_fullStr The ProkaBioDen database, a global database of benthic prokaryotic biomasses and densities in the marine realm
title_full_unstemmed The ProkaBioDen database, a global database of benthic prokaryotic biomasses and densities in the marine realm
title_short The ProkaBioDen database, a global database of benthic prokaryotic biomasses and densities in the marine realm
title_sort prokabioden database, a global database of benthic prokaryotic biomasses and densities in the marine realm
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9019028/
https://www.ncbi.nlm.nih.gov/pubmed/35440731
http://dx.doi.org/10.1038/s41597-022-01281-x
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