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Analytical approaches for evaluating passive acoustic monitoring data: A case study of avian vocalizations

1. The interface between field biology and technology is energizing the collection of vast quantities of environmental data. Passive acoustic monitoring, the use of unattended recording devices to capture environmental sound, is an example where technological advances have facilitated an influx of d...

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Autores principales: Symes, Laurel B., Kittelberger, Kyle D., Stone, Sophia M., Holmes, Richard T., Jones, Jessica S., Castaneda Ruvalcaba, Itzel P., Webster, Michael S., Ayres, Matthew P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9022445/
https://www.ncbi.nlm.nih.gov/pubmed/35475182
http://dx.doi.org/10.1002/ece3.8797
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author Symes, Laurel B.
Kittelberger, Kyle D.
Stone, Sophia M.
Holmes, Richard T.
Jones, Jessica S.
Castaneda Ruvalcaba, Itzel P.
Webster, Michael S.
Ayres, Matthew P.
author_facet Symes, Laurel B.
Kittelberger, Kyle D.
Stone, Sophia M.
Holmes, Richard T.
Jones, Jessica S.
Castaneda Ruvalcaba, Itzel P.
Webster, Michael S.
Ayres, Matthew P.
author_sort Symes, Laurel B.
collection PubMed
description 1. The interface between field biology and technology is energizing the collection of vast quantities of environmental data. Passive acoustic monitoring, the use of unattended recording devices to capture environmental sound, is an example where technological advances have facilitated an influx of data that routinely exceeds the capacity for analysis. Computational advances, particularly the integration of machine learning approaches, will support data extraction efforts. However, the analysis and interpretation of these data will require parallel growth in conceptual and technical approaches for data analysis. Here, we use a large hand‐annotated dataset to showcase analysis approaches that will become increasingly useful as datasets grow and data extraction can be partially automated. 2. We propose and demonstrate seven technical approaches for analyzing bioacoustic data. These include the following: (1) generating species lists and descriptions of vocal variation, (2) assessing how abiotic factors (e.g., rain and wind) impact vocalization rates, (3) testing for differences in community vocalization activity across sites and habitat types, (4) quantifying the phenology of vocal activity, (5) testing for spatiotemporal correlations in vocalizations within species, (6) among species, and (7) using rarefaction analysis to quantify diversity and optimize bioacoustic sampling. 3. To demonstrate these approaches, we sampled in 2016 and 2018 and used hand annotations of 129,866 bird vocalizations from two forests in New Hampshire, USA, including sites in the Hubbard Brook Experiment Forest where bioacoustic data could be integrated with more than 50 years of observer‐based avian studies. Acoustic monitoring revealed differences in community patterns in vocalization activity between forests of different ages, as well as between nearby similar watersheds. Of numerous environmental variables that were evaluated, background noise was most clearly related to vocalization rates. The songbird community included one cluster of species where vocalization rates declined as ambient noise increased and another cluster where vocalization rates declined over the nesting season. In some common species, the number of vocalizations produced per day was correlated at scales of up to 15 km. Rarefaction analyses showed that adding sampling sites increased species detections more than adding sampling days. 4. Although our analyses used hand‐annotated data, the methods will extend readily to large‐scale automated detection of vocalization events. Such data are likely to become increasingly available as autonomous recording units become more advanced, affordable, and power efficient. Passive acoustic monitoring with human or automated identification at the species level offers growing potential to complement observer‐based studies of avian ecology.
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spelling pubmed-90224452022-04-25 Analytical approaches for evaluating passive acoustic monitoring data: A case study of avian vocalizations Symes, Laurel B. Kittelberger, Kyle D. Stone, Sophia M. Holmes, Richard T. Jones, Jessica S. Castaneda Ruvalcaba, Itzel P. Webster, Michael S. Ayres, Matthew P. Ecol Evol Research Articles 1. The interface between field biology and technology is energizing the collection of vast quantities of environmental data. Passive acoustic monitoring, the use of unattended recording devices to capture environmental sound, is an example where technological advances have facilitated an influx of data that routinely exceeds the capacity for analysis. Computational advances, particularly the integration of machine learning approaches, will support data extraction efforts. However, the analysis and interpretation of these data will require parallel growth in conceptual and technical approaches for data analysis. Here, we use a large hand‐annotated dataset to showcase analysis approaches that will become increasingly useful as datasets grow and data extraction can be partially automated. 2. We propose and demonstrate seven technical approaches for analyzing bioacoustic data. These include the following: (1) generating species lists and descriptions of vocal variation, (2) assessing how abiotic factors (e.g., rain and wind) impact vocalization rates, (3) testing for differences in community vocalization activity across sites and habitat types, (4) quantifying the phenology of vocal activity, (5) testing for spatiotemporal correlations in vocalizations within species, (6) among species, and (7) using rarefaction analysis to quantify diversity and optimize bioacoustic sampling. 3. To demonstrate these approaches, we sampled in 2016 and 2018 and used hand annotations of 129,866 bird vocalizations from two forests in New Hampshire, USA, including sites in the Hubbard Brook Experiment Forest where bioacoustic data could be integrated with more than 50 years of observer‐based avian studies. Acoustic monitoring revealed differences in community patterns in vocalization activity between forests of different ages, as well as between nearby similar watersheds. Of numerous environmental variables that were evaluated, background noise was most clearly related to vocalization rates. The songbird community included one cluster of species where vocalization rates declined as ambient noise increased and another cluster where vocalization rates declined over the nesting season. In some common species, the number of vocalizations produced per day was correlated at scales of up to 15 km. Rarefaction analyses showed that adding sampling sites increased species detections more than adding sampling days. 4. Although our analyses used hand‐annotated data, the methods will extend readily to large‐scale automated detection of vocalization events. Such data are likely to become increasingly available as autonomous recording units become more advanced, affordable, and power efficient. Passive acoustic monitoring with human or automated identification at the species level offers growing potential to complement observer‐based studies of avian ecology. John Wiley and Sons Inc. 2022-04-21 /pmc/articles/PMC9022445/ /pubmed/35475182 http://dx.doi.org/10.1002/ece3.8797 Text en © 2022 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Symes, Laurel B.
Kittelberger, Kyle D.
Stone, Sophia M.
Holmes, Richard T.
Jones, Jessica S.
Castaneda Ruvalcaba, Itzel P.
Webster, Michael S.
Ayres, Matthew P.
Analytical approaches for evaluating passive acoustic monitoring data: A case study of avian vocalizations
title Analytical approaches for evaluating passive acoustic monitoring data: A case study of avian vocalizations
title_full Analytical approaches for evaluating passive acoustic monitoring data: A case study of avian vocalizations
title_fullStr Analytical approaches for evaluating passive acoustic monitoring data: A case study of avian vocalizations
title_full_unstemmed Analytical approaches for evaluating passive acoustic monitoring data: A case study of avian vocalizations
title_short Analytical approaches for evaluating passive acoustic monitoring data: A case study of avian vocalizations
title_sort analytical approaches for evaluating passive acoustic monitoring data: a case study of avian vocalizations
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9022445/
https://www.ncbi.nlm.nih.gov/pubmed/35475182
http://dx.doi.org/10.1002/ece3.8797
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