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App-based COVID-19 syndromic surveillance and prediction of hospital admissions in COVID Symptom Study Sweden

The app-based COVID Symptom Study was launched in Sweden in April 2020 to contribute to real-time COVID-19 surveillance. We enrolled 143,531 study participants (≥18 years) who contributed 10.6 million daily symptom reports between April 29, 2020 and February 10, 2021. Here, we include data from 19,1...

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Autores principales: Kennedy, Beatrice, Fitipaldi, Hugo, Hammar, Ulf, Maziarz, Marlena, Tsereteli, Neli, Oskolkov, Nikolay, Varotsis, Georgios, Franks, Camilla A., Nguyen, Diem, Spiliopoulos, Lampros, Adami, Hans-Olov, Björk, Jonas, Engblom, Stefan, Fall, Katja, Grimby-Ekman, Anna, Litton, Jan-Eric, Martinell, Mats, Oudin, Anna, Sjöström, Torbjörn, Timpka, Toomas, Sudre, Carole H., Graham, Mark S., du Cadet, Julien Lavigne, Chan, Andrew T., Davies, Richard, Ganesh, Sajaysurya, May, Anna, Ourselin, Sébastien, Pujol, Joan Capdevila, Selvachandran, Somesh, Wolf, Jonathan, Spector, Tim D., Steves, Claire J., Gomez, Maria F., Franks, Paul W., Fall, Tove
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9023535/
https://www.ncbi.nlm.nih.gov/pubmed/35449172
http://dx.doi.org/10.1038/s41467-022-29608-7
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author Kennedy, Beatrice
Fitipaldi, Hugo
Hammar, Ulf
Maziarz, Marlena
Tsereteli, Neli
Oskolkov, Nikolay
Varotsis, Georgios
Franks, Camilla A.
Nguyen, Diem
Spiliopoulos, Lampros
Adami, Hans-Olov
Björk, Jonas
Engblom, Stefan
Fall, Katja
Grimby-Ekman, Anna
Litton, Jan-Eric
Martinell, Mats
Oudin, Anna
Sjöström, Torbjörn
Timpka, Toomas
Sudre, Carole H.
Graham, Mark S.
du Cadet, Julien Lavigne
Chan, Andrew T.
Davies, Richard
Ganesh, Sajaysurya
May, Anna
Ourselin, Sébastien
Pujol, Joan Capdevila
Selvachandran, Somesh
Wolf, Jonathan
Spector, Tim D.
Steves, Claire J.
Gomez, Maria F.
Franks, Paul W.
Fall, Tove
author_facet Kennedy, Beatrice
Fitipaldi, Hugo
Hammar, Ulf
Maziarz, Marlena
Tsereteli, Neli
Oskolkov, Nikolay
Varotsis, Georgios
Franks, Camilla A.
Nguyen, Diem
Spiliopoulos, Lampros
Adami, Hans-Olov
Björk, Jonas
Engblom, Stefan
Fall, Katja
Grimby-Ekman, Anna
Litton, Jan-Eric
Martinell, Mats
Oudin, Anna
Sjöström, Torbjörn
Timpka, Toomas
Sudre, Carole H.
Graham, Mark S.
du Cadet, Julien Lavigne
Chan, Andrew T.
Davies, Richard
Ganesh, Sajaysurya
May, Anna
Ourselin, Sébastien
Pujol, Joan Capdevila
Selvachandran, Somesh
Wolf, Jonathan
Spector, Tim D.
Steves, Claire J.
Gomez, Maria F.
Franks, Paul W.
Fall, Tove
author_sort Kennedy, Beatrice
collection PubMed
description The app-based COVID Symptom Study was launched in Sweden in April 2020 to contribute to real-time COVID-19 surveillance. We enrolled 143,531 study participants (≥18 years) who contributed 10.6 million daily symptom reports between April 29, 2020 and February 10, 2021. Here, we include data from 19,161 self-reported PCR tests to create a symptom-based model to estimate the individual probability of symptomatic COVID-19, with an AUC of 0.78 (95% CI 0.74–0.83) in an external dataset. These individual probabilities are employed to estimate daily regional COVID-19 prevalence, which are in turn used together with current hospital data to predict next week COVID-19 hospital admissions. We show that this hospital prediction model demonstrates a lower median absolute percentage error (MdAPE: 25.9%) across the five most populated regions in Sweden during the first pandemic wave than a model based on case notifications (MdAPE: 30.3%). During the second wave, the error rates are similar. When we apply the same model to an English dataset, not including local COVID-19 test data, we observe MdAPEs of 22.3% and 19.0% during the first and second pandemic waves, respectively, highlighting the transferability of the prediction model.
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spelling pubmed-90235352022-04-28 App-based COVID-19 syndromic surveillance and prediction of hospital admissions in COVID Symptom Study Sweden Kennedy, Beatrice Fitipaldi, Hugo Hammar, Ulf Maziarz, Marlena Tsereteli, Neli Oskolkov, Nikolay Varotsis, Georgios Franks, Camilla A. Nguyen, Diem Spiliopoulos, Lampros Adami, Hans-Olov Björk, Jonas Engblom, Stefan Fall, Katja Grimby-Ekman, Anna Litton, Jan-Eric Martinell, Mats Oudin, Anna Sjöström, Torbjörn Timpka, Toomas Sudre, Carole H. Graham, Mark S. du Cadet, Julien Lavigne Chan, Andrew T. Davies, Richard Ganesh, Sajaysurya May, Anna Ourselin, Sébastien Pujol, Joan Capdevila Selvachandran, Somesh Wolf, Jonathan Spector, Tim D. Steves, Claire J. Gomez, Maria F. Franks, Paul W. Fall, Tove Nat Commun Article The app-based COVID Symptom Study was launched in Sweden in April 2020 to contribute to real-time COVID-19 surveillance. We enrolled 143,531 study participants (≥18 years) who contributed 10.6 million daily symptom reports between April 29, 2020 and February 10, 2021. Here, we include data from 19,161 self-reported PCR tests to create a symptom-based model to estimate the individual probability of symptomatic COVID-19, with an AUC of 0.78 (95% CI 0.74–0.83) in an external dataset. These individual probabilities are employed to estimate daily regional COVID-19 prevalence, which are in turn used together with current hospital data to predict next week COVID-19 hospital admissions. We show that this hospital prediction model demonstrates a lower median absolute percentage error (MdAPE: 25.9%) across the five most populated regions in Sweden during the first pandemic wave than a model based on case notifications (MdAPE: 30.3%). During the second wave, the error rates are similar. When we apply the same model to an English dataset, not including local COVID-19 test data, we observe MdAPEs of 22.3% and 19.0% during the first and second pandemic waves, respectively, highlighting the transferability of the prediction model. Nature Publishing Group UK 2022-04-21 /pmc/articles/PMC9023535/ /pubmed/35449172 http://dx.doi.org/10.1038/s41467-022-29608-7 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Kennedy, Beatrice
Fitipaldi, Hugo
Hammar, Ulf
Maziarz, Marlena
Tsereteli, Neli
Oskolkov, Nikolay
Varotsis, Georgios
Franks, Camilla A.
Nguyen, Diem
Spiliopoulos, Lampros
Adami, Hans-Olov
Björk, Jonas
Engblom, Stefan
Fall, Katja
Grimby-Ekman, Anna
Litton, Jan-Eric
Martinell, Mats
Oudin, Anna
Sjöström, Torbjörn
Timpka, Toomas
Sudre, Carole H.
Graham, Mark S.
du Cadet, Julien Lavigne
Chan, Andrew T.
Davies, Richard
Ganesh, Sajaysurya
May, Anna
Ourselin, Sébastien
Pujol, Joan Capdevila
Selvachandran, Somesh
Wolf, Jonathan
Spector, Tim D.
Steves, Claire J.
Gomez, Maria F.
Franks, Paul W.
Fall, Tove
App-based COVID-19 syndromic surveillance and prediction of hospital admissions in COVID Symptom Study Sweden
title App-based COVID-19 syndromic surveillance and prediction of hospital admissions in COVID Symptom Study Sweden
title_full App-based COVID-19 syndromic surveillance and prediction of hospital admissions in COVID Symptom Study Sweden
title_fullStr App-based COVID-19 syndromic surveillance and prediction of hospital admissions in COVID Symptom Study Sweden
title_full_unstemmed App-based COVID-19 syndromic surveillance and prediction of hospital admissions in COVID Symptom Study Sweden
title_short App-based COVID-19 syndromic surveillance and prediction of hospital admissions in COVID Symptom Study Sweden
title_sort app-based covid-19 syndromic surveillance and prediction of hospital admissions in covid symptom study sweden
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9023535/
https://www.ncbi.nlm.nih.gov/pubmed/35449172
http://dx.doi.org/10.1038/s41467-022-29608-7
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