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ADC-Net: An Open-Source Deep Learning Network for Automated Dispersion Compensation in Optical Coherence Tomography

Chromatic dispersion is a common problem to degrade the system resolution in optical coherence tomography (OCT). This study is to develop a deep learning network for automated dispersion compensation (ADC-Net) in OCT. The ADC-Net is based on a modified UNet architecture which employs an encoder-deco...

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Autores principales: Ahmed, Shaiban, Le, David, Son, Taeyoon, Adejumo, Tobiloba, Ma, Guangying, Yao, Xincheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9024062/
https://www.ncbi.nlm.nih.gov/pubmed/35463032
http://dx.doi.org/10.3389/fmed.2022.864879
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author Ahmed, Shaiban
Le, David
Son, Taeyoon
Adejumo, Tobiloba
Ma, Guangying
Yao, Xincheng
author_facet Ahmed, Shaiban
Le, David
Son, Taeyoon
Adejumo, Tobiloba
Ma, Guangying
Yao, Xincheng
author_sort Ahmed, Shaiban
collection PubMed
description Chromatic dispersion is a common problem to degrade the system resolution in optical coherence tomography (OCT). This study is to develop a deep learning network for automated dispersion compensation (ADC-Net) in OCT. The ADC-Net is based on a modified UNet architecture which employs an encoder-decoder pipeline. The input section encompasses partially compensated OCT B-scans with individual retinal layers optimized. Corresponding output is a fully compensated OCT B-scan with all retinal layers optimized. Two numeric parameters, i.e., peak signal to noise ratio (PSNR) and structural similarity index metric computed at multiple scales (MS-SSIM), were used for objective assessment of the ADC-Net performance and optimal values of 29.95 ± 2.52 dB and 0.97 ± 0.014 were obtained respectively. Comparative analysis of training models, including single, three, five, seven and nine input channels were implemented. The mode with five-input channels was observed to be optimal for ADC-Net training to achieve robust dispersion compensation in OCT.
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spelling pubmed-90240622022-04-23 ADC-Net: An Open-Source Deep Learning Network for Automated Dispersion Compensation in Optical Coherence Tomography Ahmed, Shaiban Le, David Son, Taeyoon Adejumo, Tobiloba Ma, Guangying Yao, Xincheng Front Med (Lausanne) Medicine Chromatic dispersion is a common problem to degrade the system resolution in optical coherence tomography (OCT). This study is to develop a deep learning network for automated dispersion compensation (ADC-Net) in OCT. The ADC-Net is based on a modified UNet architecture which employs an encoder-decoder pipeline. The input section encompasses partially compensated OCT B-scans with individual retinal layers optimized. Corresponding output is a fully compensated OCT B-scan with all retinal layers optimized. Two numeric parameters, i.e., peak signal to noise ratio (PSNR) and structural similarity index metric computed at multiple scales (MS-SSIM), were used for objective assessment of the ADC-Net performance and optimal values of 29.95 ± 2.52 dB and 0.97 ± 0.014 were obtained respectively. Comparative analysis of training models, including single, three, five, seven and nine input channels were implemented. The mode with five-input channels was observed to be optimal for ADC-Net training to achieve robust dispersion compensation in OCT. Frontiers Media S.A. 2022-04-08 /pmc/articles/PMC9024062/ /pubmed/35463032 http://dx.doi.org/10.3389/fmed.2022.864879 Text en Copyright © 2022 Ahmed, Le, Son, Adejumo, Ma and Yao. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Medicine
Ahmed, Shaiban
Le, David
Son, Taeyoon
Adejumo, Tobiloba
Ma, Guangying
Yao, Xincheng
ADC-Net: An Open-Source Deep Learning Network for Automated Dispersion Compensation in Optical Coherence Tomography
title ADC-Net: An Open-Source Deep Learning Network for Automated Dispersion Compensation in Optical Coherence Tomography
title_full ADC-Net: An Open-Source Deep Learning Network for Automated Dispersion Compensation in Optical Coherence Tomography
title_fullStr ADC-Net: An Open-Source Deep Learning Network for Automated Dispersion Compensation in Optical Coherence Tomography
title_full_unstemmed ADC-Net: An Open-Source Deep Learning Network for Automated Dispersion Compensation in Optical Coherence Tomography
title_short ADC-Net: An Open-Source Deep Learning Network for Automated Dispersion Compensation in Optical Coherence Tomography
title_sort adc-net: an open-source deep learning network for automated dispersion compensation in optical coherence tomography
topic Medicine
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9024062/
https://www.ncbi.nlm.nih.gov/pubmed/35463032
http://dx.doi.org/10.3389/fmed.2022.864879
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