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ELIXIR-A: An Interactive Visualization Tool for Multi-Target Pharmacophore Refinement
[Image: see text] Pharmacophore modeling is an important step in computer-aided drug design for identifying interaction points between the receptor and ligand complex. Pharmacophore-based models can be used for de novo drug design, lead identification, and optimization in virtual screening as well a...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9025992/ https://www.ncbi.nlm.nih.gov/pubmed/35474832 http://dx.doi.org/10.1021/acsomega.1c07144 |
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author | Wang, Haoqi Mulgaonkar, Nirmitee Pérez, Lisa M. Fernando, Sandun |
author_facet | Wang, Haoqi Mulgaonkar, Nirmitee Pérez, Lisa M. Fernando, Sandun |
author_sort | Wang, Haoqi |
collection | PubMed |
description | [Image: see text] Pharmacophore modeling is an important step in computer-aided drug design for identifying interaction points between the receptor and ligand complex. Pharmacophore-based models can be used for de novo drug design, lead identification, and optimization in virtual screening as well as for multi-target drug design. There is a need to develop a user-friendly interface to filter the pharmacophore points resulting from multiple ligand conformations. Here, we present ELIXIR-A, a Python-based pharmacophore refinement tool, to help refine the pharmacophores between multiple ligands from multiple receptors. Furthermore, the output can be easily used in virtual pharmacophore-based screening platforms, thereby contributing to the development of drug discovery. |
format | Online Article Text |
id | pubmed-9025992 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-90259922022-04-25 ELIXIR-A: An Interactive Visualization Tool for Multi-Target Pharmacophore Refinement Wang, Haoqi Mulgaonkar, Nirmitee Pérez, Lisa M. Fernando, Sandun ACS Omega [Image: see text] Pharmacophore modeling is an important step in computer-aided drug design for identifying interaction points between the receptor and ligand complex. Pharmacophore-based models can be used for de novo drug design, lead identification, and optimization in virtual screening as well as for multi-target drug design. There is a need to develop a user-friendly interface to filter the pharmacophore points resulting from multiple ligand conformations. Here, we present ELIXIR-A, a Python-based pharmacophore refinement tool, to help refine the pharmacophores between multiple ligands from multiple receptors. Furthermore, the output can be easily used in virtual pharmacophore-based screening platforms, thereby contributing to the development of drug discovery. American Chemical Society 2022-04-05 /pmc/articles/PMC9025992/ /pubmed/35474832 http://dx.doi.org/10.1021/acsomega.1c07144 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Wang, Haoqi Mulgaonkar, Nirmitee Pérez, Lisa M. Fernando, Sandun ELIXIR-A: An Interactive Visualization Tool for Multi-Target Pharmacophore Refinement |
title | ELIXIR-A: An Interactive Visualization Tool for Multi-Target
Pharmacophore Refinement |
title_full | ELIXIR-A: An Interactive Visualization Tool for Multi-Target
Pharmacophore Refinement |
title_fullStr | ELIXIR-A: An Interactive Visualization Tool for Multi-Target
Pharmacophore Refinement |
title_full_unstemmed | ELIXIR-A: An Interactive Visualization Tool for Multi-Target
Pharmacophore Refinement |
title_short | ELIXIR-A: An Interactive Visualization Tool for Multi-Target
Pharmacophore Refinement |
title_sort | elixir-a: an interactive visualization tool for multi-target
pharmacophore refinement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9025992/ https://www.ncbi.nlm.nih.gov/pubmed/35474832 http://dx.doi.org/10.1021/acsomega.1c07144 |
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