Cargando…
Development of a Real-Time Recombinase Polymerase Amplification Assay for the Rapid Detection of African Swine Fever Virus Genotype I and II
African swine fever (ASF) is a contagious viral disease in pigs and wild boars which poses a major threat to the pig industry. Rapid and accurate diagnosis is necessary to control ASF. Hence, we developed a rapid diagnostic method using a recombinase polymerase amplification (RPA) assay targeting th...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9026452/ https://www.ncbi.nlm.nih.gov/pubmed/35456114 http://dx.doi.org/10.3390/pathogens11040439 |
_version_ | 1784691125831860224 |
---|---|
author | Ilya, Titov Monoldorova, Sezim Kang, Shin-Seok Yun, Seungri Byeon, Hyeon-Seop Mariia, Nefedeva Jeon, Bo-Young |
author_facet | Ilya, Titov Monoldorova, Sezim Kang, Shin-Seok Yun, Seungri Byeon, Hyeon-Seop Mariia, Nefedeva Jeon, Bo-Young |
author_sort | Ilya, Titov |
collection | PubMed |
description | African swine fever (ASF) is a contagious viral disease in pigs and wild boars which poses a major threat to the pig industry. Rapid and accurate diagnosis is necessary to control ASF. Hence, we developed a rapid diagnostic method using a recombinase polymerase amplification (RPA) assay targeting the conserved sequences of CP204L (p30) thatcan rapidly detect ASF virus (ASFV) genotype strains I and II. The lower detection limit of the real-time RPA assay was 5 × 10(1) copies per reaction. The real-time RPA assay effectively detected ASFV isolates and clinical specimens belonging to ASFV genotypes I and II. The sensitivity and specificity of the assay were 96.8% (95% confidence interval (CI): 83.3–99.9) and 100% (95% CI: 88.4–100.0), respectively. The agreement between the real-time RPA assay and a reference commercial real-time quantitative polymerase chain reaction (qPCR) was 100%. The real-time RPA assay had a detection time of 6.0 min (95% CI: 5.7–6.2), which was significantly shorter than that of qPCR (49 min; 95% CI: 47.4–50.6; p < 0.001). Thus, the developed real-time RPA assay is a rapid and accurate diagnostic tool for detecting ASFV genotypes I and II. |
format | Online Article Text |
id | pubmed-9026452 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-90264522022-04-23 Development of a Real-Time Recombinase Polymerase Amplification Assay for the Rapid Detection of African Swine Fever Virus Genotype I and II Ilya, Titov Monoldorova, Sezim Kang, Shin-Seok Yun, Seungri Byeon, Hyeon-Seop Mariia, Nefedeva Jeon, Bo-Young Pathogens Article African swine fever (ASF) is a contagious viral disease in pigs and wild boars which poses a major threat to the pig industry. Rapid and accurate diagnosis is necessary to control ASF. Hence, we developed a rapid diagnostic method using a recombinase polymerase amplification (RPA) assay targeting the conserved sequences of CP204L (p30) thatcan rapidly detect ASF virus (ASFV) genotype strains I and II. The lower detection limit of the real-time RPA assay was 5 × 10(1) copies per reaction. The real-time RPA assay effectively detected ASFV isolates and clinical specimens belonging to ASFV genotypes I and II. The sensitivity and specificity of the assay were 96.8% (95% confidence interval (CI): 83.3–99.9) and 100% (95% CI: 88.4–100.0), respectively. The agreement between the real-time RPA assay and a reference commercial real-time quantitative polymerase chain reaction (qPCR) was 100%. The real-time RPA assay had a detection time of 6.0 min (95% CI: 5.7–6.2), which was significantly shorter than that of qPCR (49 min; 95% CI: 47.4–50.6; p < 0.001). Thus, the developed real-time RPA assay is a rapid and accurate diagnostic tool for detecting ASFV genotypes I and II. MDPI 2022-04-05 /pmc/articles/PMC9026452/ /pubmed/35456114 http://dx.doi.org/10.3390/pathogens11040439 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Ilya, Titov Monoldorova, Sezim Kang, Shin-Seok Yun, Seungri Byeon, Hyeon-Seop Mariia, Nefedeva Jeon, Bo-Young Development of a Real-Time Recombinase Polymerase Amplification Assay for the Rapid Detection of African Swine Fever Virus Genotype I and II |
title | Development of a Real-Time Recombinase Polymerase Amplification Assay for the Rapid Detection of African Swine Fever Virus Genotype I and II |
title_full | Development of a Real-Time Recombinase Polymerase Amplification Assay for the Rapid Detection of African Swine Fever Virus Genotype I and II |
title_fullStr | Development of a Real-Time Recombinase Polymerase Amplification Assay for the Rapid Detection of African Swine Fever Virus Genotype I and II |
title_full_unstemmed | Development of a Real-Time Recombinase Polymerase Amplification Assay for the Rapid Detection of African Swine Fever Virus Genotype I and II |
title_short | Development of a Real-Time Recombinase Polymerase Amplification Assay for the Rapid Detection of African Swine Fever Virus Genotype I and II |
title_sort | development of a real-time recombinase polymerase amplification assay for the rapid detection of african swine fever virus genotype i and ii |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9026452/ https://www.ncbi.nlm.nih.gov/pubmed/35456114 http://dx.doi.org/10.3390/pathogens11040439 |
work_keys_str_mv | AT ilyatitov developmentofarealtimerecombinasepolymeraseamplificationassayfortherapiddetectionofafricanswinefevervirusgenotypeiandii AT monoldorovasezim developmentofarealtimerecombinasepolymeraseamplificationassayfortherapiddetectionofafricanswinefevervirusgenotypeiandii AT kangshinseok developmentofarealtimerecombinasepolymeraseamplificationassayfortherapiddetectionofafricanswinefevervirusgenotypeiandii AT yunseungri developmentofarealtimerecombinasepolymeraseamplificationassayfortherapiddetectionofafricanswinefevervirusgenotypeiandii AT byeonhyeonseop developmentofarealtimerecombinasepolymeraseamplificationassayfortherapiddetectionofafricanswinefevervirusgenotypeiandii AT mariianefedeva developmentofarealtimerecombinasepolymeraseamplificationassayfortherapiddetectionofafricanswinefevervirusgenotypeiandii AT jeonboyoung developmentofarealtimerecombinasepolymeraseamplificationassayfortherapiddetectionofafricanswinefevervirusgenotypeiandii |