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Development of a Real-Time Recombinase Polymerase Amplification Assay for the Rapid Detection of African Swine Fever Virus Genotype I and II

African swine fever (ASF) is a contagious viral disease in pigs and wild boars which poses a major threat to the pig industry. Rapid and accurate diagnosis is necessary to control ASF. Hence, we developed a rapid diagnostic method using a recombinase polymerase amplification (RPA) assay targeting th...

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Autores principales: Ilya, Titov, Monoldorova, Sezim, Kang, Shin-Seok, Yun, Seungri, Byeon, Hyeon-Seop, Mariia, Nefedeva, Jeon, Bo-Young
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9026452/
https://www.ncbi.nlm.nih.gov/pubmed/35456114
http://dx.doi.org/10.3390/pathogens11040439
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author Ilya, Titov
Monoldorova, Sezim
Kang, Shin-Seok
Yun, Seungri
Byeon, Hyeon-Seop
Mariia, Nefedeva
Jeon, Bo-Young
author_facet Ilya, Titov
Monoldorova, Sezim
Kang, Shin-Seok
Yun, Seungri
Byeon, Hyeon-Seop
Mariia, Nefedeva
Jeon, Bo-Young
author_sort Ilya, Titov
collection PubMed
description African swine fever (ASF) is a contagious viral disease in pigs and wild boars which poses a major threat to the pig industry. Rapid and accurate diagnosis is necessary to control ASF. Hence, we developed a rapid diagnostic method using a recombinase polymerase amplification (RPA) assay targeting the conserved sequences of CP204L (p30) thatcan rapidly detect ASF virus (ASFV) genotype strains I and II. The lower detection limit of the real-time RPA assay was 5 × 10(1) copies per reaction. The real-time RPA assay effectively detected ASFV isolates and clinical specimens belonging to ASFV genotypes I and II. The sensitivity and specificity of the assay were 96.8% (95% confidence interval (CI): 83.3–99.9) and 100% (95% CI: 88.4–100.0), respectively. The agreement between the real-time RPA assay and a reference commercial real-time quantitative polymerase chain reaction (qPCR) was 100%. The real-time RPA assay had a detection time of 6.0 min (95% CI: 5.7–6.2), which was significantly shorter than that of qPCR (49 min; 95% CI: 47.4–50.6; p < 0.001). Thus, the developed real-time RPA assay is a rapid and accurate diagnostic tool for detecting ASFV genotypes I and II.
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spelling pubmed-90264522022-04-23 Development of a Real-Time Recombinase Polymerase Amplification Assay for the Rapid Detection of African Swine Fever Virus Genotype I and II Ilya, Titov Monoldorova, Sezim Kang, Shin-Seok Yun, Seungri Byeon, Hyeon-Seop Mariia, Nefedeva Jeon, Bo-Young Pathogens Article African swine fever (ASF) is a contagious viral disease in pigs and wild boars which poses a major threat to the pig industry. Rapid and accurate diagnosis is necessary to control ASF. Hence, we developed a rapid diagnostic method using a recombinase polymerase amplification (RPA) assay targeting the conserved sequences of CP204L (p30) thatcan rapidly detect ASF virus (ASFV) genotype strains I and II. The lower detection limit of the real-time RPA assay was 5 × 10(1) copies per reaction. The real-time RPA assay effectively detected ASFV isolates and clinical specimens belonging to ASFV genotypes I and II. The sensitivity and specificity of the assay were 96.8% (95% confidence interval (CI): 83.3–99.9) and 100% (95% CI: 88.4–100.0), respectively. The agreement between the real-time RPA assay and a reference commercial real-time quantitative polymerase chain reaction (qPCR) was 100%. The real-time RPA assay had a detection time of 6.0 min (95% CI: 5.7–6.2), which was significantly shorter than that of qPCR (49 min; 95% CI: 47.4–50.6; p < 0.001). Thus, the developed real-time RPA assay is a rapid and accurate diagnostic tool for detecting ASFV genotypes I and II. MDPI 2022-04-05 /pmc/articles/PMC9026452/ /pubmed/35456114 http://dx.doi.org/10.3390/pathogens11040439 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Ilya, Titov
Monoldorova, Sezim
Kang, Shin-Seok
Yun, Seungri
Byeon, Hyeon-Seop
Mariia, Nefedeva
Jeon, Bo-Young
Development of a Real-Time Recombinase Polymerase Amplification Assay for the Rapid Detection of African Swine Fever Virus Genotype I and II
title Development of a Real-Time Recombinase Polymerase Amplification Assay for the Rapid Detection of African Swine Fever Virus Genotype I and II
title_full Development of a Real-Time Recombinase Polymerase Amplification Assay for the Rapid Detection of African Swine Fever Virus Genotype I and II
title_fullStr Development of a Real-Time Recombinase Polymerase Amplification Assay for the Rapid Detection of African Swine Fever Virus Genotype I and II
title_full_unstemmed Development of a Real-Time Recombinase Polymerase Amplification Assay for the Rapid Detection of African Swine Fever Virus Genotype I and II
title_short Development of a Real-Time Recombinase Polymerase Amplification Assay for the Rapid Detection of African Swine Fever Virus Genotype I and II
title_sort development of a real-time recombinase polymerase amplification assay for the rapid detection of african swine fever virus genotype i and ii
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9026452/
https://www.ncbi.nlm.nih.gov/pubmed/35456114
http://dx.doi.org/10.3390/pathogens11040439
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