Genomic and epidemiological report of the recombinant XJ lineage SARS-CoV-2 variant, detected in northern Finland, January 2022

Recombinant sequences of the SARS-CoV-2 Omicron variant were detected in surveillance samples collected in north-western Finland in January 2022. We detected 191 samples with an identical genome arrangement in weeks 3 to 11, indicating sustained community transmission. The recombinant lineage has a...

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Autores principales: Lindh, Erika, Smura, Teemu, Blomqvist, Soile, Liitsola, Kirsi, Vauhkonen, Hanna, Savolainen, Laura, Ikonen, Jaana, Ronkainen, Jukka, Taskila, Jyri, Taskila, Tea, Sakaranaho, Pertti, Savolainen-Kopra, Carita, Vapalahti, Olli, Ikonen, Niina
Formato: Online Artículo Texto
Lenguaje:English
Publicado: European Centre for Disease Prevention and Control (ECDC) 2022
Materias:
Rapid Communication
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9027151/
https://www.ncbi.nlm.nih.gov/pubmed/35451361
http://dx.doi.org/10.2807/1560-7917.ES.2022.27.16.2200257
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author Lindh, Erika
Smura, Teemu
Blomqvist, Soile
Liitsola, Kirsi
Vauhkonen, Hanna
Savolainen, Laura
Ikonen, Jaana
Ronkainen, Jukka
Taskila, Jyri
Taskila, Tea
Sakaranaho, Pertti
Savolainen-Kopra, Carita
Vapalahti, Olli
Ikonen, Niina
author_facet Lindh, Erika
Smura, Teemu
Blomqvist, Soile
Liitsola, Kirsi
Vauhkonen, Hanna
Savolainen, Laura
Ikonen, Jaana
Ronkainen, Jukka
Taskila, Jyri
Taskila, Tea
Sakaranaho, Pertti
Savolainen-Kopra, Carita
Vapalahti, Olli
Ikonen, Niina
author_sort Lindh, Erika
collection PubMed
description Recombinant sequences of the SARS-CoV-2 Omicron variant were detected in surveillance samples collected in north-western Finland in January 2022. We detected 191 samples with an identical genome arrangement in weeks 3 to 11, indicating sustained community transmission. The recombinant lineage has a 5’-end of BA.1, a recombination breakpoint between orf1a and orf1b (nucleotide position 13,296–15,240) and a 3’-end of BA.2 including the S gene. We describe the available genomic and epidemiological data about this currently circulating recombinant XJ lineage.
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spelling pubmed-90271512022-05-03 Genomic and epidemiological report of the recombinant XJ lineage SARS-CoV-2 variant, detected in northern Finland, January 2022 Lindh, Erika Smura, Teemu Blomqvist, Soile Liitsola, Kirsi Vauhkonen, Hanna Savolainen, Laura Ikonen, Jaana Ronkainen, Jukka Taskila, Jyri Taskila, Tea Sakaranaho, Pertti Savolainen-Kopra, Carita Vapalahti, Olli Ikonen, Niina Euro Surveill Rapid Communication Recombinant sequences of the SARS-CoV-2 Omicron variant were detected in surveillance samples collected in north-western Finland in January 2022. We detected 191 samples with an identical genome arrangement in weeks 3 to 11, indicating sustained community transmission. The recombinant lineage has a 5’-end of BA.1, a recombination breakpoint between orf1a and orf1b (nucleotide position 13,296–15,240) and a 3’-end of BA.2 including the S gene. We describe the available genomic and epidemiological data about this currently circulating recombinant XJ lineage. European Centre for Disease Prevention and Control (ECDC) 2022-04-21 /pmc/articles/PMC9027151/ /pubmed/35451361 http://dx.doi.org/10.2807/1560-7917.ES.2022.27.16.2200257 Text en This article is copyright of the authors or their affiliated institutions, 2022. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC BY 4.0) Licence. You may share and adapt the material, but must give appropriate credit to the source, provide a link to the licence, and indicate if changes were made.
spellingShingle Rapid Communication
Lindh, Erika
Smura, Teemu
Blomqvist, Soile
Liitsola, Kirsi
Vauhkonen, Hanna
Savolainen, Laura
Ikonen, Jaana
Ronkainen, Jukka
Taskila, Jyri
Taskila, Tea
Sakaranaho, Pertti
Savolainen-Kopra, Carita
Vapalahti, Olli
Ikonen, Niina
Genomic and epidemiological report of the recombinant XJ lineage SARS-CoV-2 variant, detected in northern Finland, January 2022
title Genomic and epidemiological report of the recombinant XJ lineage SARS-CoV-2 variant, detected in northern Finland, January 2022
title_full Genomic and epidemiological report of the recombinant XJ lineage SARS-CoV-2 variant, detected in northern Finland, January 2022
title_fullStr Genomic and epidemiological report of the recombinant XJ lineage SARS-CoV-2 variant, detected in northern Finland, January 2022
title_full_unstemmed Genomic and epidemiological report of the recombinant XJ lineage SARS-CoV-2 variant, detected in northern Finland, January 2022
title_short Genomic and epidemiological report of the recombinant XJ lineage SARS-CoV-2 variant, detected in northern Finland, January 2022
title_sort genomic and epidemiological report of the recombinant xj lineage sars-cov-2 variant, detected in northern finland, january 2022
topic Rapid Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9027151/
https://www.ncbi.nlm.nih.gov/pubmed/35451361
http://dx.doi.org/10.2807/1560-7917.ES.2022.27.16.2200257
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