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Digital Microfluidics-Powered Real-Time Monitoring of Isothermal DNA Amplification of Cancer Biomarker

We introduce a digital microfluidics (DMF) platform specifically designed to perform a loop-mediated isothermal amplification (LAMP) of DNA and applied it to a real-time amplification to monitor a cancer biomarker, c-Myc (associated to 40% of all human tumors), using fluorescence microscopy. We demo...

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Autores principales: Coelho, Beatriz Jorge, Veigas, Bruno, Bettencourt, Luís, Águas, Hugo, Fortunato, Elvira, Martins, Rodrigo, Baptista, Pedro V., Igreja, Rui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9028060/
https://www.ncbi.nlm.nih.gov/pubmed/35448261
http://dx.doi.org/10.3390/bios12040201
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author Coelho, Beatriz Jorge
Veigas, Bruno
Bettencourt, Luís
Águas, Hugo
Fortunato, Elvira
Martins, Rodrigo
Baptista, Pedro V.
Igreja, Rui
author_facet Coelho, Beatriz Jorge
Veigas, Bruno
Bettencourt, Luís
Águas, Hugo
Fortunato, Elvira
Martins, Rodrigo
Baptista, Pedro V.
Igreja, Rui
author_sort Coelho, Beatriz Jorge
collection PubMed
description We introduce a digital microfluidics (DMF) platform specifically designed to perform a loop-mediated isothermal amplification (LAMP) of DNA and applied it to a real-time amplification to monitor a cancer biomarker, c-Myc (associated to 40% of all human tumors), using fluorescence microscopy. We demonstrate the full manipulation of the sample and reagents on the DMF platform, resulting in the successful amplification of 90 pg of the target DNA (0.5 ng/µL) in less than one hour. Furthermore, we test the efficiency of an innovative mixing strategy in DMF by employing two mixing methodologies onto the DMF droplets—low frequency AC (alternating current) actuation as well as back-and-forth droplet motion—which allows for improved fluorescence readouts. Fluorophore bleaching effects are minimized through on-chip sample partitioning by DMF processes and sequential droplet irradiation. Finally, LAMP reactions require only 2 µL volume droplets, which represents a 10-fold volume reduction in comparison to benchtop LAMP.
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spelling pubmed-90280602022-04-23 Digital Microfluidics-Powered Real-Time Monitoring of Isothermal DNA Amplification of Cancer Biomarker Coelho, Beatriz Jorge Veigas, Bruno Bettencourt, Luís Águas, Hugo Fortunato, Elvira Martins, Rodrigo Baptista, Pedro V. Igreja, Rui Biosensors (Basel) Article We introduce a digital microfluidics (DMF) platform specifically designed to perform a loop-mediated isothermal amplification (LAMP) of DNA and applied it to a real-time amplification to monitor a cancer biomarker, c-Myc (associated to 40% of all human tumors), using fluorescence microscopy. We demonstrate the full manipulation of the sample and reagents on the DMF platform, resulting in the successful amplification of 90 pg of the target DNA (0.5 ng/µL) in less than one hour. Furthermore, we test the efficiency of an innovative mixing strategy in DMF by employing two mixing methodologies onto the DMF droplets—low frequency AC (alternating current) actuation as well as back-and-forth droplet motion—which allows for improved fluorescence readouts. Fluorophore bleaching effects are minimized through on-chip sample partitioning by DMF processes and sequential droplet irradiation. Finally, LAMP reactions require only 2 µL volume droplets, which represents a 10-fold volume reduction in comparison to benchtop LAMP. MDPI 2022-03-28 /pmc/articles/PMC9028060/ /pubmed/35448261 http://dx.doi.org/10.3390/bios12040201 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Coelho, Beatriz Jorge
Veigas, Bruno
Bettencourt, Luís
Águas, Hugo
Fortunato, Elvira
Martins, Rodrigo
Baptista, Pedro V.
Igreja, Rui
Digital Microfluidics-Powered Real-Time Monitoring of Isothermal DNA Amplification of Cancer Biomarker
title Digital Microfluidics-Powered Real-Time Monitoring of Isothermal DNA Amplification of Cancer Biomarker
title_full Digital Microfluidics-Powered Real-Time Monitoring of Isothermal DNA Amplification of Cancer Biomarker
title_fullStr Digital Microfluidics-Powered Real-Time Monitoring of Isothermal DNA Amplification of Cancer Biomarker
title_full_unstemmed Digital Microfluidics-Powered Real-Time Monitoring of Isothermal DNA Amplification of Cancer Biomarker
title_short Digital Microfluidics-Powered Real-Time Monitoring of Isothermal DNA Amplification of Cancer Biomarker
title_sort digital microfluidics-powered real-time monitoring of isothermal dna amplification of cancer biomarker
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9028060/
https://www.ncbi.nlm.nih.gov/pubmed/35448261
http://dx.doi.org/10.3390/bios12040201
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