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Wanted: Standards for FAIR taxonomic concept representations and relationships

Making the most of biodiversity data requires linking observations of biological species from multiple sources both efficiently and accurately (Bisby 2000, Franz et al. 2016). Aggregating occurrence records using taxonomic names and synonyms is computationally efficient but known to experience signi...

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Autores principales: Sterner, Beckett, Upham, Nathan, Gupta, Prashant, Powell, Caleb, Franz, Nico M
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9028594/
https://www.ncbi.nlm.nih.gov/pubmed/35462676
http://dx.doi.org/10.3897/biss.5.75587
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author Sterner, Beckett
Upham, Nathan
Gupta, Prashant
Powell, Caleb
Franz, Nico M
author_facet Sterner, Beckett
Upham, Nathan
Gupta, Prashant
Powell, Caleb
Franz, Nico M
author_sort Sterner, Beckett
collection PubMed
description Making the most of biodiversity data requires linking observations of biological species from multiple sources both efficiently and accurately (Bisby 2000, Franz et al. 2016). Aggregating occurrence records using taxonomic names and synonyms is computationally efficient but known to experience significant limitations on accuracy when the assumption of one-to-one relationships between names and biological entities breaks down (Remsen 2016, Franz and Sterner 2018). Taxonomic treatments and checklists provide authoritative information about the correct usage of names for species, including operational representations of the meanings of those names in the form of range maps, reference genetic sequences, or diagnostic traits. They increasingly provide taxonomic intelligence in the form of precise description of the semantic relationships between different published names in the literature. Making this authoritative information Findable, Accessible, Interoperable, and Reusable (FAIR; Wilkinson et al. 2016) would be a transformative advance for biodiversity data sharing and help drive adoption and novel extensions of existing standards such as the Taxonomic Concept Schema and the OpenBiodiv Ontology (Kennedy et al. 2006, Senderov et al. 2018). We call for the greater, global Biodiversity Information Standards (TDWG) and taxonomy community to commit to extending and expanding on how FAIR applies to biodiversity data and include practical targets and criteria for the publication and digitization of taxonomic concept representations and alignments in taxonomic treatments, checklists, and backbones.
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spelling pubmed-90285942022-04-22 Wanted: Standards for FAIR taxonomic concept representations and relationships Sterner, Beckett Upham, Nathan Gupta, Prashant Powell, Caleb Franz, Nico M Biodivers Inf Sci Stand Article Making the most of biodiversity data requires linking observations of biological species from multiple sources both efficiently and accurately (Bisby 2000, Franz et al. 2016). Aggregating occurrence records using taxonomic names and synonyms is computationally efficient but known to experience significant limitations on accuracy when the assumption of one-to-one relationships between names and biological entities breaks down (Remsen 2016, Franz and Sterner 2018). Taxonomic treatments and checklists provide authoritative information about the correct usage of names for species, including operational representations of the meanings of those names in the form of range maps, reference genetic sequences, or diagnostic traits. They increasingly provide taxonomic intelligence in the form of precise description of the semantic relationships between different published names in the literature. Making this authoritative information Findable, Accessible, Interoperable, and Reusable (FAIR; Wilkinson et al. 2016) would be a transformative advance for biodiversity data sharing and help drive adoption and novel extensions of existing standards such as the Taxonomic Concept Schema and the OpenBiodiv Ontology (Kennedy et al. 2006, Senderov et al. 2018). We call for the greater, global Biodiversity Information Standards (TDWG) and taxonomy community to commit to extending and expanding on how FAIR applies to biodiversity data and include practical targets and criteria for the publication and digitization of taxonomic concept representations and alignments in taxonomic treatments, checklists, and backbones. 2021 2021-09-23 /pmc/articles/PMC9028594/ /pubmed/35462676 http://dx.doi.org/10.3897/biss.5.75587 Text en https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Article
Sterner, Beckett
Upham, Nathan
Gupta, Prashant
Powell, Caleb
Franz, Nico M
Wanted: Standards for FAIR taxonomic concept representations and relationships
title Wanted: Standards for FAIR taxonomic concept representations and relationships
title_full Wanted: Standards for FAIR taxonomic concept representations and relationships
title_fullStr Wanted: Standards for FAIR taxonomic concept representations and relationships
title_full_unstemmed Wanted: Standards for FAIR taxonomic concept representations and relationships
title_short Wanted: Standards for FAIR taxonomic concept representations and relationships
title_sort wanted: standards for fair taxonomic concept representations and relationships
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9028594/
https://www.ncbi.nlm.nih.gov/pubmed/35462676
http://dx.doi.org/10.3897/biss.5.75587
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