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DLK2 Acts as a Potential Prognostic Biomarker for Clear Cell Renal Cell Carcinoma Based on Bioinformatics Analysis

Clear cell renal cell carcinoma (ccRCC) is the most common RCC subtype with a high mortality. It has been reported that delta-like 1 homologue (DLK1) participates in the tumor microenvironmental remodeling of ccRCC, but the relationship between delta-like 2 homologue (DLK2, a DLK1 homologue) and ccR...

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Autores principales: Lee, Man-Gang, Lee, Yung-Kuo, Huang, Shih-Chung, Chang, Chen-Lin, Ko, Chou-Yuan, Lee, Wen-Chin, Chen, Tung-Yuan, Tzou, Shiow-Jyu, Huang, Cheng-Yi, Tai, Ming-Hong, Lin, Yu-Wei, Kung, Mei-Lang, Tsai, Ming-Chao, Chen, Yung-Lung, Chang, Yi-Chen, Wen, Zhi-Hong, Huang, Chao-Cheng, Chu, Tian-Huei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9030291/
https://www.ncbi.nlm.nih.gov/pubmed/35456435
http://dx.doi.org/10.3390/genes13040629
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author Lee, Man-Gang
Lee, Yung-Kuo
Huang, Shih-Chung
Chang, Chen-Lin
Ko, Chou-Yuan
Lee, Wen-Chin
Chen, Tung-Yuan
Tzou, Shiow-Jyu
Huang, Cheng-Yi
Tai, Ming-Hong
Lin, Yu-Wei
Kung, Mei-Lang
Tsai, Ming-Chao
Chen, Yung-Lung
Chang, Yi-Chen
Wen, Zhi-Hong
Huang, Chao-Cheng
Chu, Tian-Huei
author_facet Lee, Man-Gang
Lee, Yung-Kuo
Huang, Shih-Chung
Chang, Chen-Lin
Ko, Chou-Yuan
Lee, Wen-Chin
Chen, Tung-Yuan
Tzou, Shiow-Jyu
Huang, Cheng-Yi
Tai, Ming-Hong
Lin, Yu-Wei
Kung, Mei-Lang
Tsai, Ming-Chao
Chen, Yung-Lung
Chang, Yi-Chen
Wen, Zhi-Hong
Huang, Chao-Cheng
Chu, Tian-Huei
author_sort Lee, Man-Gang
collection PubMed
description Clear cell renal cell carcinoma (ccRCC) is the most common RCC subtype with a high mortality. It has been reported that delta-like 1 homologue (DLK1) participates in the tumor microenvironmental remodeling of ccRCC, but the relationship between delta-like 2 homologue (DLK2, a DLK1 homologue) and ccRCC is still unclear. Thus, this study aims to investigate the role of DLK2 in the biological function and disease prognosis of ccRCC using bioinformatics analysis. The TNMplot database showed that DLK2 was upregulated in ccRCC tissues. From the UALCAN analysis, the overexpression of DLK2 was associated with advanced stage and high grade in ccRCC. Moreover, the Kaplan-Meier plotter (KM Plotter) database showed that DLK2 upregulation was associated with poor survival outcome in ccRCC. By the LinkedOmics analysis, DLK2 signaling may participated in the modulation of ccRCC extracellular matrix (ECM), cell metabolism, ribosome biogenesis, TGF-β signaling and Notch pathway. Besides, Tumor Immune Estimation Resource (TIMER) analysis showed that the macrophage and CD8(+) T cell infiltrations were associated with good prognosis in ccRCC patients. Finally, DLK2 overexpression was associated with the reduced macrophage recruitments and the M1–M2 polarization of macrophage in ccRCC tissues. Together, DLK2 may acts as a novel biomarker, even therapeutic target in ccRCC. However, this study lacks experimental validation, and further studies are required to support this viewpoint.
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spelling pubmed-90302912022-04-23 DLK2 Acts as a Potential Prognostic Biomarker for Clear Cell Renal Cell Carcinoma Based on Bioinformatics Analysis Lee, Man-Gang Lee, Yung-Kuo Huang, Shih-Chung Chang, Chen-Lin Ko, Chou-Yuan Lee, Wen-Chin Chen, Tung-Yuan Tzou, Shiow-Jyu Huang, Cheng-Yi Tai, Ming-Hong Lin, Yu-Wei Kung, Mei-Lang Tsai, Ming-Chao Chen, Yung-Lung Chang, Yi-Chen Wen, Zhi-Hong Huang, Chao-Cheng Chu, Tian-Huei Genes (Basel) Article Clear cell renal cell carcinoma (ccRCC) is the most common RCC subtype with a high mortality. It has been reported that delta-like 1 homologue (DLK1) participates in the tumor microenvironmental remodeling of ccRCC, but the relationship between delta-like 2 homologue (DLK2, a DLK1 homologue) and ccRCC is still unclear. Thus, this study aims to investigate the role of DLK2 in the biological function and disease prognosis of ccRCC using bioinformatics analysis. The TNMplot database showed that DLK2 was upregulated in ccRCC tissues. From the UALCAN analysis, the overexpression of DLK2 was associated with advanced stage and high grade in ccRCC. Moreover, the Kaplan-Meier plotter (KM Plotter) database showed that DLK2 upregulation was associated with poor survival outcome in ccRCC. By the LinkedOmics analysis, DLK2 signaling may participated in the modulation of ccRCC extracellular matrix (ECM), cell metabolism, ribosome biogenesis, TGF-β signaling and Notch pathway. Besides, Tumor Immune Estimation Resource (TIMER) analysis showed that the macrophage and CD8(+) T cell infiltrations were associated with good prognosis in ccRCC patients. Finally, DLK2 overexpression was associated with the reduced macrophage recruitments and the M1–M2 polarization of macrophage in ccRCC tissues. Together, DLK2 may acts as a novel biomarker, even therapeutic target in ccRCC. However, this study lacks experimental validation, and further studies are required to support this viewpoint. MDPI 2022-04-01 /pmc/articles/PMC9030291/ /pubmed/35456435 http://dx.doi.org/10.3390/genes13040629 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Lee, Man-Gang
Lee, Yung-Kuo
Huang, Shih-Chung
Chang, Chen-Lin
Ko, Chou-Yuan
Lee, Wen-Chin
Chen, Tung-Yuan
Tzou, Shiow-Jyu
Huang, Cheng-Yi
Tai, Ming-Hong
Lin, Yu-Wei
Kung, Mei-Lang
Tsai, Ming-Chao
Chen, Yung-Lung
Chang, Yi-Chen
Wen, Zhi-Hong
Huang, Chao-Cheng
Chu, Tian-Huei
DLK2 Acts as a Potential Prognostic Biomarker for Clear Cell Renal Cell Carcinoma Based on Bioinformatics Analysis
title DLK2 Acts as a Potential Prognostic Biomarker for Clear Cell Renal Cell Carcinoma Based on Bioinformatics Analysis
title_full DLK2 Acts as a Potential Prognostic Biomarker for Clear Cell Renal Cell Carcinoma Based on Bioinformatics Analysis
title_fullStr DLK2 Acts as a Potential Prognostic Biomarker for Clear Cell Renal Cell Carcinoma Based on Bioinformatics Analysis
title_full_unstemmed DLK2 Acts as a Potential Prognostic Biomarker for Clear Cell Renal Cell Carcinoma Based on Bioinformatics Analysis
title_short DLK2 Acts as a Potential Prognostic Biomarker for Clear Cell Renal Cell Carcinoma Based on Bioinformatics Analysis
title_sort dlk2 acts as a potential prognostic biomarker for clear cell renal cell carcinoma based on bioinformatics analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9030291/
https://www.ncbi.nlm.nih.gov/pubmed/35456435
http://dx.doi.org/10.3390/genes13040629
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