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Blood miRNAs Are Linked to Frequent Asthma Exacerbations in Childhood Asthma and Adult COPD

MicroRNAs have been independently associated with asthma and COPD; however, it is unclear if microRNA associations will overlap when evaluating retrospective acute exacerbations. Objective: We hypothesized that peripheral blood microRNAs would be associated with retrospective acute asthma exacerbati...

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Autores principales: Tiwari, Anshul, Hobbs, Brian D., Li, Jiang, Kho, Alvin T., Amr, Samir, Celedón, Juan C., Weiss, Scott T., Hersh, Craig P., Tantisira, Kelan G., McGeachie, Michael J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9030787/
https://www.ncbi.nlm.nih.gov/pubmed/35447890
http://dx.doi.org/10.3390/ncrna8020027
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author Tiwari, Anshul
Hobbs, Brian D.
Li, Jiang
Kho, Alvin T.
Amr, Samir
Celedón, Juan C.
Weiss, Scott T.
Hersh, Craig P.
Tantisira, Kelan G.
McGeachie, Michael J.
author_facet Tiwari, Anshul
Hobbs, Brian D.
Li, Jiang
Kho, Alvin T.
Amr, Samir
Celedón, Juan C.
Weiss, Scott T.
Hersh, Craig P.
Tantisira, Kelan G.
McGeachie, Michael J.
author_sort Tiwari, Anshul
collection PubMed
description MicroRNAs have been independently associated with asthma and COPD; however, it is unclear if microRNA associations will overlap when evaluating retrospective acute exacerbations. Objective: We hypothesized that peripheral blood microRNAs would be associated with retrospective acute asthma exacerbations in a pediatric asthma cohort and that such associations may also be relevant to acute COPD exacerbations. Methods: We conducted small-RNA sequencing on 374 whole-blood samples from children with asthma ages 6–14 years who participated in the Genetics of Asthma in Costa Rica Study (GACRS) and 450 current and former adult smokers with and without COPD who participated in the COPDGene study. Measurements and Main Results: After QC, we had 351 samples and 649 microRNAs for Differential Expression (DE) analysis between the frequent (n = 183) and no or infrequent exacerbation (n = 168) groups in GACRS. Fifteen upregulated miRs had odds ratios (OR) between 1.22 and 1.59 for a doubling of miR counts, while five downregulated miRs had ORs between 0.57 and 0.8. These were assessed for generalization in COPDGene, where three of the upregulated miRs (miR-532-3p, miR-296-5p, and miR-766-3p) and two of the downregulated miRs (miR-7-5p and miR-451b) replicated. Pathway enrichment analysis showed MAPK and PI3K-Akt signaling pathways were strongly enriched for target genes of DE miRNAs and miRNAs generalizing to COPD exacerbations, as well as infection response pathways to various pathogens. Conclusion: miRs (451b; 7-5p; 532-3p; 296-5p and 766-3p) associated with both childhood asthma and adult COPD exacerbations may play a vital role in airflow obstruction and exacerbations and point to shared genomic regulatory machinery underlying exacerbations in both diseases.
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spelling pubmed-90307872022-04-23 Blood miRNAs Are Linked to Frequent Asthma Exacerbations in Childhood Asthma and Adult COPD Tiwari, Anshul Hobbs, Brian D. Li, Jiang Kho, Alvin T. Amr, Samir Celedón, Juan C. Weiss, Scott T. Hersh, Craig P. Tantisira, Kelan G. McGeachie, Michael J. Noncoding RNA Article MicroRNAs have been independently associated with asthma and COPD; however, it is unclear if microRNA associations will overlap when evaluating retrospective acute exacerbations. Objective: We hypothesized that peripheral blood microRNAs would be associated with retrospective acute asthma exacerbations in a pediatric asthma cohort and that such associations may also be relevant to acute COPD exacerbations. Methods: We conducted small-RNA sequencing on 374 whole-blood samples from children with asthma ages 6–14 years who participated in the Genetics of Asthma in Costa Rica Study (GACRS) and 450 current and former adult smokers with and without COPD who participated in the COPDGene study. Measurements and Main Results: After QC, we had 351 samples and 649 microRNAs for Differential Expression (DE) analysis between the frequent (n = 183) and no or infrequent exacerbation (n = 168) groups in GACRS. Fifteen upregulated miRs had odds ratios (OR) between 1.22 and 1.59 for a doubling of miR counts, while five downregulated miRs had ORs between 0.57 and 0.8. These were assessed for generalization in COPDGene, where three of the upregulated miRs (miR-532-3p, miR-296-5p, and miR-766-3p) and two of the downregulated miRs (miR-7-5p and miR-451b) replicated. Pathway enrichment analysis showed MAPK and PI3K-Akt signaling pathways were strongly enriched for target genes of DE miRNAs and miRNAs generalizing to COPD exacerbations, as well as infection response pathways to various pathogens. Conclusion: miRs (451b; 7-5p; 532-3p; 296-5p and 766-3p) associated with both childhood asthma and adult COPD exacerbations may play a vital role in airflow obstruction and exacerbations and point to shared genomic regulatory machinery underlying exacerbations in both diseases. MDPI 2022-04-03 /pmc/articles/PMC9030787/ /pubmed/35447890 http://dx.doi.org/10.3390/ncrna8020027 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Tiwari, Anshul
Hobbs, Brian D.
Li, Jiang
Kho, Alvin T.
Amr, Samir
Celedón, Juan C.
Weiss, Scott T.
Hersh, Craig P.
Tantisira, Kelan G.
McGeachie, Michael J.
Blood miRNAs Are Linked to Frequent Asthma Exacerbations in Childhood Asthma and Adult COPD
title Blood miRNAs Are Linked to Frequent Asthma Exacerbations in Childhood Asthma and Adult COPD
title_full Blood miRNAs Are Linked to Frequent Asthma Exacerbations in Childhood Asthma and Adult COPD
title_fullStr Blood miRNAs Are Linked to Frequent Asthma Exacerbations in Childhood Asthma and Adult COPD
title_full_unstemmed Blood miRNAs Are Linked to Frequent Asthma Exacerbations in Childhood Asthma and Adult COPD
title_short Blood miRNAs Are Linked to Frequent Asthma Exacerbations in Childhood Asthma and Adult COPD
title_sort blood mirnas are linked to frequent asthma exacerbations in childhood asthma and adult copd
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9030787/
https://www.ncbi.nlm.nih.gov/pubmed/35447890
http://dx.doi.org/10.3390/ncrna8020027
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