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Tubulin Alpha 1b Is Associated with the Immune Cell Infiltration and the Response of HCC Patients to Immunotherapy

Tubulin alpha 1b (TUBA1B) is an important microtubule isoform that is involved in the formation of the cytoskeleton. The objective of our study was to explore the potential of TUBA1B in predicting the prognosis of HCC and patients’ response to immunotherapy. Raw data was extracted from TCGA and GEO...

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Autores principales: Hu, Xinyao, Zhu, Hua, Chen, Biao, He, Xiaoqin, Shen, Yang, Zhang, Xiaoyu, Chen, Wenliang, Liu, Xin, Xu, Yangtao, Xu, Ximing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9031616/
https://www.ncbi.nlm.nih.gov/pubmed/35453905
http://dx.doi.org/10.3390/diagnostics12040858
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author Hu, Xinyao
Zhu, Hua
Chen, Biao
He, Xiaoqin
Shen, Yang
Zhang, Xiaoyu
Chen, Wenliang
Liu, Xin
Xu, Yangtao
Xu, Ximing
author_facet Hu, Xinyao
Zhu, Hua
Chen, Biao
He, Xiaoqin
Shen, Yang
Zhang, Xiaoyu
Chen, Wenliang
Liu, Xin
Xu, Yangtao
Xu, Ximing
author_sort Hu, Xinyao
collection PubMed
description Tubulin alpha 1b (TUBA1B) is an important microtubule isoform that is involved in the formation of the cytoskeleton. The objective of our study was to explore the potential of TUBA1B in predicting the prognosis of HCC and patients’ response to immunotherapy. Raw data was extracted from TCGA and GEO databases, and then HCCDB, TIMER, HPA, and GEPIA websites, as well as R software, were used to perform bioinformatics analysis to investigate the potential of TUBA1B as a prognostic and immunotherapeutic marker for hepatocellular carcinoma (HCC). We found that both TUBA1B mRNA and protein were highly expressed in HCC. TUBA1B was proved to be an independent prognostic predictor of HCC. Additionally, TUBA1B expression was associated with the infiltration of several immune cells in HCC. Moreover, TUBA1B was coexpressed with immune-related genes and immune checkpoints. Patients expressing high TUBA1B responded better to immune checkpoint inhibitor (ICI) therapy. GO and KEGG analyses revealed that TUBA1B may be involved in the processes of cell cycle, spliceosome, and DNA replication. In conclusion, TUBA1B is expected to be a prognostic and immunotherapeutic marker for HCC.
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spelling pubmed-90316162022-04-23 Tubulin Alpha 1b Is Associated with the Immune Cell Infiltration and the Response of HCC Patients to Immunotherapy Hu, Xinyao Zhu, Hua Chen, Biao He, Xiaoqin Shen, Yang Zhang, Xiaoyu Chen, Wenliang Liu, Xin Xu, Yangtao Xu, Ximing Diagnostics (Basel) Article Tubulin alpha 1b (TUBA1B) is an important microtubule isoform that is involved in the formation of the cytoskeleton. The objective of our study was to explore the potential of TUBA1B in predicting the prognosis of HCC and patients’ response to immunotherapy. Raw data was extracted from TCGA and GEO databases, and then HCCDB, TIMER, HPA, and GEPIA websites, as well as R software, were used to perform bioinformatics analysis to investigate the potential of TUBA1B as a prognostic and immunotherapeutic marker for hepatocellular carcinoma (HCC). We found that both TUBA1B mRNA and protein were highly expressed in HCC. TUBA1B was proved to be an independent prognostic predictor of HCC. Additionally, TUBA1B expression was associated with the infiltration of several immune cells in HCC. Moreover, TUBA1B was coexpressed with immune-related genes and immune checkpoints. Patients expressing high TUBA1B responded better to immune checkpoint inhibitor (ICI) therapy. GO and KEGG analyses revealed that TUBA1B may be involved in the processes of cell cycle, spliceosome, and DNA replication. In conclusion, TUBA1B is expected to be a prognostic and immunotherapeutic marker for HCC. MDPI 2022-03-30 /pmc/articles/PMC9031616/ /pubmed/35453905 http://dx.doi.org/10.3390/diagnostics12040858 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Hu, Xinyao
Zhu, Hua
Chen, Biao
He, Xiaoqin
Shen, Yang
Zhang, Xiaoyu
Chen, Wenliang
Liu, Xin
Xu, Yangtao
Xu, Ximing
Tubulin Alpha 1b Is Associated with the Immune Cell Infiltration and the Response of HCC Patients to Immunotherapy
title Tubulin Alpha 1b Is Associated with the Immune Cell Infiltration and the Response of HCC Patients to Immunotherapy
title_full Tubulin Alpha 1b Is Associated with the Immune Cell Infiltration and the Response of HCC Patients to Immunotherapy
title_fullStr Tubulin Alpha 1b Is Associated with the Immune Cell Infiltration and the Response of HCC Patients to Immunotherapy
title_full_unstemmed Tubulin Alpha 1b Is Associated with the Immune Cell Infiltration and the Response of HCC Patients to Immunotherapy
title_short Tubulin Alpha 1b Is Associated with the Immune Cell Infiltration and the Response of HCC Patients to Immunotherapy
title_sort tubulin alpha 1b is associated with the immune cell infiltration and the response of hcc patients to immunotherapy
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9031616/
https://www.ncbi.nlm.nih.gov/pubmed/35453905
http://dx.doi.org/10.3390/diagnostics12040858
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