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Conventional and Real-Time PCR Targeting bla(OXA) Genes as Reliable Methods for a Rapid Detection of Carbapenem-Resistant Acinetobacter baumannii Clinical Strains

Multidrug-resistant Acinetobacter baumannii, particularly those producing carbapenemases, are spread worldwide. A reliable detection of carbapenemases is essential to choose the appropriate antimicrobial therapy and, consequently, prevent the dissemination of carbapenem-resistant strains. The aim of...

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Autores principales: Depka, Dagmara, Mikucka, Agnieszka, Bogiel, Tomasz, Rzepka, Mateusz, Zawadka, Patryk, Gospodarek-Komkowska, Eugenia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9032895/
https://www.ncbi.nlm.nih.gov/pubmed/35453207
http://dx.doi.org/10.3390/antibiotics11040455
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author Depka, Dagmara
Mikucka, Agnieszka
Bogiel, Tomasz
Rzepka, Mateusz
Zawadka, Patryk
Gospodarek-Komkowska, Eugenia
author_facet Depka, Dagmara
Mikucka, Agnieszka
Bogiel, Tomasz
Rzepka, Mateusz
Zawadka, Patryk
Gospodarek-Komkowska, Eugenia
author_sort Depka, Dagmara
collection PubMed
description Multidrug-resistant Acinetobacter baumannii, particularly those producing carbapenemases, are spread worldwide. A reliable detection of carbapenemases is essential to choose the appropriate antimicrobial therapy and, consequently, prevent the dissemination of carbapenem-resistant strains. The aim of this study is to examine the molecular basis of the carbapenem resistance mechanism and estimation of conventional PCR and real-time PCR usefulness for the detection of oxacillinases when compared to phenotypic carbapenemases detection. The following methods were evaluated: the CarbAcineto NP test, Carbapenem Inactivation Method, CPO panels of semiautomated antimicrobial susceptibility testing method on the BD Phoenix™ M50 system, conventional Polymerase Chain Reaction and real-time PCR. The eazyplex(®) SuperBug complete A assay was used as the reference method. Among the tested strains, 39 (67.2%) carried the bla(OXA-40) gene, while the bla(OXA-23) gene was noted amongst 19 (32.8%) isolates. The diagnostic sensitivities of the studied assays were as follows: CarbAcineto NP—65.5%; CIM—100%; CPO—100%; conventional PCR—100%; real-time PCR—100%.
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spelling pubmed-90328952022-04-23 Conventional and Real-Time PCR Targeting bla(OXA) Genes as Reliable Methods for a Rapid Detection of Carbapenem-Resistant Acinetobacter baumannii Clinical Strains Depka, Dagmara Mikucka, Agnieszka Bogiel, Tomasz Rzepka, Mateusz Zawadka, Patryk Gospodarek-Komkowska, Eugenia Antibiotics (Basel) Article Multidrug-resistant Acinetobacter baumannii, particularly those producing carbapenemases, are spread worldwide. A reliable detection of carbapenemases is essential to choose the appropriate antimicrobial therapy and, consequently, prevent the dissemination of carbapenem-resistant strains. The aim of this study is to examine the molecular basis of the carbapenem resistance mechanism and estimation of conventional PCR and real-time PCR usefulness for the detection of oxacillinases when compared to phenotypic carbapenemases detection. The following methods were evaluated: the CarbAcineto NP test, Carbapenem Inactivation Method, CPO panels of semiautomated antimicrobial susceptibility testing method on the BD Phoenix™ M50 system, conventional Polymerase Chain Reaction and real-time PCR. The eazyplex(®) SuperBug complete A assay was used as the reference method. Among the tested strains, 39 (67.2%) carried the bla(OXA-40) gene, while the bla(OXA-23) gene was noted amongst 19 (32.8%) isolates. The diagnostic sensitivities of the studied assays were as follows: CarbAcineto NP—65.5%; CIM—100%; CPO—100%; conventional PCR—100%; real-time PCR—100%. MDPI 2022-03-28 /pmc/articles/PMC9032895/ /pubmed/35453207 http://dx.doi.org/10.3390/antibiotics11040455 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Depka, Dagmara
Mikucka, Agnieszka
Bogiel, Tomasz
Rzepka, Mateusz
Zawadka, Patryk
Gospodarek-Komkowska, Eugenia
Conventional and Real-Time PCR Targeting bla(OXA) Genes as Reliable Methods for a Rapid Detection of Carbapenem-Resistant Acinetobacter baumannii Clinical Strains
title Conventional and Real-Time PCR Targeting bla(OXA) Genes as Reliable Methods for a Rapid Detection of Carbapenem-Resistant Acinetobacter baumannii Clinical Strains
title_full Conventional and Real-Time PCR Targeting bla(OXA) Genes as Reliable Methods for a Rapid Detection of Carbapenem-Resistant Acinetobacter baumannii Clinical Strains
title_fullStr Conventional and Real-Time PCR Targeting bla(OXA) Genes as Reliable Methods for a Rapid Detection of Carbapenem-Resistant Acinetobacter baumannii Clinical Strains
title_full_unstemmed Conventional and Real-Time PCR Targeting bla(OXA) Genes as Reliable Methods for a Rapid Detection of Carbapenem-Resistant Acinetobacter baumannii Clinical Strains
title_short Conventional and Real-Time PCR Targeting bla(OXA) Genes as Reliable Methods for a Rapid Detection of Carbapenem-Resistant Acinetobacter baumannii Clinical Strains
title_sort conventional and real-time pcr targeting bla(oxa) genes as reliable methods for a rapid detection of carbapenem-resistant acinetobacter baumannii clinical strains
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9032895/
https://www.ncbi.nlm.nih.gov/pubmed/35453207
http://dx.doi.org/10.3390/antibiotics11040455
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