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Identification of Molecular Correlations Between DHRS4 and Progressive Neurodegeneration in Amyotrophic Lateral Sclerosis By Gene Co-Expression Network Analysis

Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease, and its candidate biomarkers have not yet been fully elucidated in previous studies. Therefore, with the present study, we aim to define and verify effective biomarkers of ALS by bioinformatics. Here, we employed differentiall...

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Autores principales: Li, Shu, Zhu, Yu, Wei, Caihui, Li, Cheng, Chen, Wenzhi, Jiang, Shishi, Yuan, Dongxiang, Xu, Renshi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9035787/
https://www.ncbi.nlm.nih.gov/pubmed/35479082
http://dx.doi.org/10.3389/fimmu.2022.874978
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author Li, Shu
Zhu, Yu
Wei, Caihui
Li, Cheng
Chen, Wenzhi
Jiang, Shishi
Yuan, Dongxiang
Xu, Renshi
author_facet Li, Shu
Zhu, Yu
Wei, Caihui
Li, Cheng
Chen, Wenzhi
Jiang, Shishi
Yuan, Dongxiang
Xu, Renshi
author_sort Li, Shu
collection PubMed
description Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease, and its candidate biomarkers have not yet been fully elucidated in previous studies. Therefore, with the present study, we aim to define and verify effective biomarkers of ALS by bioinformatics. Here, we employed differentially expressed gene (DEG) analysis, weighted gene co-expression network analysis (WGCNA), enrichment analysis, immune infiltration analysis, and protein–protein interaction (PPI) to identify biomarkers of ALS. To validate the biomarkers, we isolated the lumbar spinal cord from mice and characterized them using Western blotting and immunofluorescence. The results showed that Dhrs4 expression in the spinal cord was upregulated with the progression of SOD1(G93A) mice, and the upregulation of DHRS4 and its synergistic DHRS3 might be primarily associated with the activation of the complement cascade in the immune system (C1QA, C1QB, C1QC, C3, and ITGB2), which might be a novel mechanism that induces spinal neurodegeneration in ALS. We propose that DHRS4 and its synergistic DHRS3 are promising molecular markers for detecting ALS progression.
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spelling pubmed-90357872022-04-26 Identification of Molecular Correlations Between DHRS4 and Progressive Neurodegeneration in Amyotrophic Lateral Sclerosis By Gene Co-Expression Network Analysis Li, Shu Zhu, Yu Wei, Caihui Li, Cheng Chen, Wenzhi Jiang, Shishi Yuan, Dongxiang Xu, Renshi Front Immunol Immunology Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease, and its candidate biomarkers have not yet been fully elucidated in previous studies. Therefore, with the present study, we aim to define and verify effective biomarkers of ALS by bioinformatics. Here, we employed differentially expressed gene (DEG) analysis, weighted gene co-expression network analysis (WGCNA), enrichment analysis, immune infiltration analysis, and protein–protein interaction (PPI) to identify biomarkers of ALS. To validate the biomarkers, we isolated the lumbar spinal cord from mice and characterized them using Western blotting and immunofluorescence. The results showed that Dhrs4 expression in the spinal cord was upregulated with the progression of SOD1(G93A) mice, and the upregulation of DHRS4 and its synergistic DHRS3 might be primarily associated with the activation of the complement cascade in the immune system (C1QA, C1QB, C1QC, C3, and ITGB2), which might be a novel mechanism that induces spinal neurodegeneration in ALS. We propose that DHRS4 and its synergistic DHRS3 are promising molecular markers for detecting ALS progression. Frontiers Media S.A. 2022-04-11 /pmc/articles/PMC9035787/ /pubmed/35479082 http://dx.doi.org/10.3389/fimmu.2022.874978 Text en Copyright © 2022 Li, Zhu, Wei, Li, Chen, Jiang, Yuan and Xu https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Immunology
Li, Shu
Zhu, Yu
Wei, Caihui
Li, Cheng
Chen, Wenzhi
Jiang, Shishi
Yuan, Dongxiang
Xu, Renshi
Identification of Molecular Correlations Between DHRS4 and Progressive Neurodegeneration in Amyotrophic Lateral Sclerosis By Gene Co-Expression Network Analysis
title Identification of Molecular Correlations Between DHRS4 and Progressive Neurodegeneration in Amyotrophic Lateral Sclerosis By Gene Co-Expression Network Analysis
title_full Identification of Molecular Correlations Between DHRS4 and Progressive Neurodegeneration in Amyotrophic Lateral Sclerosis By Gene Co-Expression Network Analysis
title_fullStr Identification of Molecular Correlations Between DHRS4 and Progressive Neurodegeneration in Amyotrophic Lateral Sclerosis By Gene Co-Expression Network Analysis
title_full_unstemmed Identification of Molecular Correlations Between DHRS4 and Progressive Neurodegeneration in Amyotrophic Lateral Sclerosis By Gene Co-Expression Network Analysis
title_short Identification of Molecular Correlations Between DHRS4 and Progressive Neurodegeneration in Amyotrophic Lateral Sclerosis By Gene Co-Expression Network Analysis
title_sort identification of molecular correlations between dhrs4 and progressive neurodegeneration in amyotrophic lateral sclerosis by gene co-expression network analysis
topic Immunology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9035787/
https://www.ncbi.nlm.nih.gov/pubmed/35479082
http://dx.doi.org/10.3389/fimmu.2022.874978
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