Protocol to analyze the bacterial pangenome using PAN2HGENE software

The PAN2HGENE is a computational tool that enables two main analyses. First, the tool can identify gene products absent from the original prokaryotic genome sequence. Second, it enables automated comparative analysis for both complete and draft genomes. All analyses are performed through a simple an...

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Autores principales: de Sá, Pablo Henrique Caracciolo Gomes, Castro Alves, Jorianne Thyeska, Veras, Adonney Allan de Oliveira
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Protocol
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9035807/
https://www.ncbi.nlm.nih.gov/pubmed/35479110
http://dx.doi.org/10.1016/j.xpro.2022.101327
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author de Sá, Pablo Henrique Caracciolo Gomes
Castro Alves, Jorianne Thyeska
Veras, Adonney Allan de Oliveira
author_facet de Sá, Pablo Henrique Caracciolo Gomes
Castro Alves, Jorianne Thyeska
Veras, Adonney Allan de Oliveira
author_sort de Sá, Pablo Henrique Caracciolo Gomes
collection PubMed
description The PAN2HGENE is a computational tool that enables two main analyses. First, the tool can identify gene products absent from the original prokaryotic genome sequence. Second, it enables automated comparative analysis for both complete and draft genomes. All analyses are performed through a simple and intuitive graphical user interface without the need for extensive and complex command lines. For complete details on the use and execution of this protocol, please refer to Silva de Oliveira (2021).
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spelling pubmed-90358072022-04-26 Protocol to analyze the bacterial pangenome using PAN2HGENE software de Sá, Pablo Henrique Caracciolo Gomes Castro Alves, Jorianne Thyeska Veras, Adonney Allan de Oliveira STAR Protoc Protocol The PAN2HGENE is a computational tool that enables two main analyses. First, the tool can identify gene products absent from the original prokaryotic genome sequence. Second, it enables automated comparative analysis for both complete and draft genomes. All analyses are performed through a simple and intuitive graphical user interface without the need for extensive and complex command lines. For complete details on the use and execution of this protocol, please refer to Silva de Oliveira (2021). Elsevier 2022-04-15 /pmc/articles/PMC9035807/ /pubmed/35479110 http://dx.doi.org/10.1016/j.xpro.2022.101327 Text en © 2022 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Protocol
de Sá, Pablo Henrique Caracciolo Gomes
Castro Alves, Jorianne Thyeska
Veras, Adonney Allan de Oliveira
Protocol to analyze the bacterial pangenome using PAN2HGENE software
title Protocol to analyze the bacterial pangenome using PAN2HGENE software
title_full Protocol to analyze the bacterial pangenome using PAN2HGENE software
title_fullStr Protocol to analyze the bacterial pangenome using PAN2HGENE software
title_full_unstemmed Protocol to analyze the bacterial pangenome using PAN2HGENE software
title_short Protocol to analyze the bacterial pangenome using PAN2HGENE software
title_sort protocol to analyze the bacterial pangenome using pan2hgene software
topic Protocol
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9035807/
https://www.ncbi.nlm.nih.gov/pubmed/35479110
http://dx.doi.org/10.1016/j.xpro.2022.101327
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