Cargando…

Role of Necroptosis and Immune Infiltration in Human Stanford Type A Aortic Dissection: Novel Insights from Bioinformatics Analyses

BACKGROUND: Stanford type A aortic dissection (TAAD) is one of the most life-threatening cardiovascular emergencies with high mortality and morbidity, and necroptosis is a newly identified type of programmed cell death and contributes to the pathogenesis of various cardiovascular diseases. However,...

Descripción completa

Detalles Bibliográficos
Autores principales: Liu, Fuqiang, Wei, Tao, Liu, Lin, Hou, Fangxia, Xu, Cuixiang, Guo, Hua, Zhang, Wei, Ma, Meijuan, Zhang, Yulian, Yu, Qi, Wang, Junkui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9036163/
https://www.ncbi.nlm.nih.gov/pubmed/35480868
http://dx.doi.org/10.1155/2022/6184802
_version_ 1784693463901536256
author Liu, Fuqiang
Wei, Tao
Liu, Lin
Hou, Fangxia
Xu, Cuixiang
Guo, Hua
Zhang, Wei
Ma, Meijuan
Zhang, Yulian
Yu, Qi
Wang, Junkui
author_facet Liu, Fuqiang
Wei, Tao
Liu, Lin
Hou, Fangxia
Xu, Cuixiang
Guo, Hua
Zhang, Wei
Ma, Meijuan
Zhang, Yulian
Yu, Qi
Wang, Junkui
author_sort Liu, Fuqiang
collection PubMed
description BACKGROUND: Stanford type A aortic dissection (TAAD) is one of the most life-threatening cardiovascular emergencies with high mortality and morbidity, and necroptosis is a newly identified type of programmed cell death and contributes to the pathogenesis of various cardiovascular diseases. However, the role of necroptosis in TAAD has not been elucidated. This study was aimed at determining the role of necroptosis in TAAD using bioinformatics analyses. METHODS: The RNA sequencing dataset GSE153434 and the microarray dataset GSE52093 were obtained from Gene Expression Omnibus (GEO) database. Differentially expressed genes of necroptosis (NRDEGs) were identified based on differentially expressed genes (DEGs) and necroptosis gene set. Gene set enrichment analysis (GSEA) was applied to evaluate the gene enrichment signaling pathway in TAAD. The STRING database and Cytoscape software were used to establish and visualize protein-protein interaction (PPI) networks and identify the key functional modules of NRDEGs. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses of NRDEGs were also performed. Additionally, Spearman correlations were used to construct the necroptosis-related transcription factor-target genes regulatory network, immune infiltration patterns were analyzed using the ImmuCellAI algorithm, and the correlation between immune cell-type abundance and NRDEGs expression was investigated. The expression levels of NRDEGs and immune infiltration were additionally verified in the GSE52093 dataset. RESULTS: We found that the necroptosis pathway was considerably enriched and activated in TAAD samples. Overall, 25 NRDEGs were identified including MLKL, RIPK1, and FADD, and among them, 18 were verified in the validation set. Moreover, GO and KEGG enrichment analyses found that NRDEGs were primarily involved in the tumor necrosis factor signaling pathway, nucleotide-binding oligomerization domain-like receptor signaling pathway, and interleukin-17 signaling pathway. The imbalance of Th17/Treg cells was identified in the TAAD samples. Furthermore, correlation analysis indicated that expression of NRDEGs was positively associated with proinflammatory immune-cell infiltrations and negatively associated with anti-inflammatory or regulatory immune-cell infiltrations. CONCLUSIONS: The present findings suggest that necroptosis phenomenon exists in TAAD and correlates with immune cell infiltration, which indicate necroptosis may promote the development of TAAD through activating immune infiltration and immune response. This study paves a new road to future investigation of the pathogenic mechanisms and therapeutic strategies for TAAD.
format Online
Article
Text
id pubmed-9036163
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Hindawi
record_format MEDLINE/PubMed
spelling pubmed-90361632022-04-26 Role of Necroptosis and Immune Infiltration in Human Stanford Type A Aortic Dissection: Novel Insights from Bioinformatics Analyses Liu, Fuqiang Wei, Tao Liu, Lin Hou, Fangxia Xu, Cuixiang Guo, Hua Zhang, Wei Ma, Meijuan Zhang, Yulian Yu, Qi Wang, Junkui Oxid Med Cell Longev Research Article BACKGROUND: Stanford type A aortic dissection (TAAD) is one of the most life-threatening cardiovascular emergencies with high mortality and morbidity, and necroptosis is a newly identified type of programmed cell death and contributes to the pathogenesis of various cardiovascular diseases. However, the role of necroptosis in TAAD has not been elucidated. This study was aimed at determining the role of necroptosis in TAAD using bioinformatics analyses. METHODS: The RNA sequencing dataset GSE153434 and the microarray dataset GSE52093 were obtained from Gene Expression Omnibus (GEO) database. Differentially expressed genes of necroptosis (NRDEGs) were identified based on differentially expressed genes (DEGs) and necroptosis gene set. Gene set enrichment analysis (GSEA) was applied to evaluate the gene enrichment signaling pathway in TAAD. The STRING database and Cytoscape software were used to establish and visualize protein-protein interaction (PPI) networks and identify the key functional modules of NRDEGs. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses of NRDEGs were also performed. Additionally, Spearman correlations were used to construct the necroptosis-related transcription factor-target genes regulatory network, immune infiltration patterns were analyzed using the ImmuCellAI algorithm, and the correlation between immune cell-type abundance and NRDEGs expression was investigated. The expression levels of NRDEGs and immune infiltration were additionally verified in the GSE52093 dataset. RESULTS: We found that the necroptosis pathway was considerably enriched and activated in TAAD samples. Overall, 25 NRDEGs were identified including MLKL, RIPK1, and FADD, and among them, 18 were verified in the validation set. Moreover, GO and KEGG enrichment analyses found that NRDEGs were primarily involved in the tumor necrosis factor signaling pathway, nucleotide-binding oligomerization domain-like receptor signaling pathway, and interleukin-17 signaling pathway. The imbalance of Th17/Treg cells was identified in the TAAD samples. Furthermore, correlation analysis indicated that expression of NRDEGs was positively associated with proinflammatory immune-cell infiltrations and negatively associated with anti-inflammatory or regulatory immune-cell infiltrations. CONCLUSIONS: The present findings suggest that necroptosis phenomenon exists in TAAD and correlates with immune cell infiltration, which indicate necroptosis may promote the development of TAAD through activating immune infiltration and immune response. This study paves a new road to future investigation of the pathogenic mechanisms and therapeutic strategies for TAAD. Hindawi 2022-04-16 /pmc/articles/PMC9036163/ /pubmed/35480868 http://dx.doi.org/10.1155/2022/6184802 Text en Copyright © 2022 Fuqiang Liu et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Liu, Fuqiang
Wei, Tao
Liu, Lin
Hou, Fangxia
Xu, Cuixiang
Guo, Hua
Zhang, Wei
Ma, Meijuan
Zhang, Yulian
Yu, Qi
Wang, Junkui
Role of Necroptosis and Immune Infiltration in Human Stanford Type A Aortic Dissection: Novel Insights from Bioinformatics Analyses
title Role of Necroptosis and Immune Infiltration in Human Stanford Type A Aortic Dissection: Novel Insights from Bioinformatics Analyses
title_full Role of Necroptosis and Immune Infiltration in Human Stanford Type A Aortic Dissection: Novel Insights from Bioinformatics Analyses
title_fullStr Role of Necroptosis and Immune Infiltration in Human Stanford Type A Aortic Dissection: Novel Insights from Bioinformatics Analyses
title_full_unstemmed Role of Necroptosis and Immune Infiltration in Human Stanford Type A Aortic Dissection: Novel Insights from Bioinformatics Analyses
title_short Role of Necroptosis and Immune Infiltration in Human Stanford Type A Aortic Dissection: Novel Insights from Bioinformatics Analyses
title_sort role of necroptosis and immune infiltration in human stanford type a aortic dissection: novel insights from bioinformatics analyses
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9036163/
https://www.ncbi.nlm.nih.gov/pubmed/35480868
http://dx.doi.org/10.1155/2022/6184802
work_keys_str_mv AT liufuqiang roleofnecroptosisandimmuneinfiltrationinhumanstanfordtypeaaorticdissectionnovelinsightsfrombioinformaticsanalyses
AT weitao roleofnecroptosisandimmuneinfiltrationinhumanstanfordtypeaaorticdissectionnovelinsightsfrombioinformaticsanalyses
AT liulin roleofnecroptosisandimmuneinfiltrationinhumanstanfordtypeaaorticdissectionnovelinsightsfrombioinformaticsanalyses
AT houfangxia roleofnecroptosisandimmuneinfiltrationinhumanstanfordtypeaaorticdissectionnovelinsightsfrombioinformaticsanalyses
AT xucuixiang roleofnecroptosisandimmuneinfiltrationinhumanstanfordtypeaaorticdissectionnovelinsightsfrombioinformaticsanalyses
AT guohua roleofnecroptosisandimmuneinfiltrationinhumanstanfordtypeaaorticdissectionnovelinsightsfrombioinformaticsanalyses
AT zhangwei roleofnecroptosisandimmuneinfiltrationinhumanstanfordtypeaaorticdissectionnovelinsightsfrombioinformaticsanalyses
AT mameijuan roleofnecroptosisandimmuneinfiltrationinhumanstanfordtypeaaorticdissectionnovelinsightsfrombioinformaticsanalyses
AT zhangyulian roleofnecroptosisandimmuneinfiltrationinhumanstanfordtypeaaorticdissectionnovelinsightsfrombioinformaticsanalyses
AT yuqi roleofnecroptosisandimmuneinfiltrationinhumanstanfordtypeaaorticdissectionnovelinsightsfrombioinformaticsanalyses
AT wangjunkui roleofnecroptosisandimmuneinfiltrationinhumanstanfordtypeaaorticdissectionnovelinsightsfrombioinformaticsanalyses