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Exploring the symbol processing ‘time interval’ parametric constraint in a Belousov–Zhabotinsky operated chemical Turing machine

Chemical reactions are powerful molecular recognition machines. This power has been recently harnessed to build actual instances of each class of experimentally realizable computing automata, using exclusively small-molecule chemistry (i.e. without requiring biomolecules). The most powerful of them,...

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Detalles Bibliográficos
Autores principales: Draper, Thomas C., Dueñas-Díez, Marta, Pérez-Mercader, Juan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society of Chemistry 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9036302/
https://www.ncbi.nlm.nih.gov/pubmed/35480432
http://dx.doi.org/10.1039/d1ra03856g
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author Draper, Thomas C.
Dueñas-Díez, Marta
Pérez-Mercader, Juan
author_facet Draper, Thomas C.
Dueñas-Díez, Marta
Pérez-Mercader, Juan
author_sort Draper, Thomas C.
collection PubMed
description Chemical reactions are powerful molecular recognition machines. This power has been recently harnessed to build actual instances of each class of experimentally realizable computing automata, using exclusively small-molecule chemistry (i.e. without requiring biomolecules). The most powerful of them, a programmable Turing machine, uses the Belousov–Zhabotinsky oscillatory chemistry, and accepts/rejects input sequences through a dual oscillatory and thermodynamic output signature. The time interval between the aliquots representing each letter of the input is the parameter that determines the time it takes to run the computation. Here, we investigate this critical performance parameter, and its effect not only on the computation speed, but also on the robustness of the accept/reject oscillatory and thermodynamic criteria. Our work demonstrates that the time interval is a non-trivial design parameter, whose choice should be made with great care. The guidelines we provide can be used in the optimization of the speed, robustness, and energy efficiency of chemical automata computations.
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spelling pubmed-90363022022-04-26 Exploring the symbol processing ‘time interval’ parametric constraint in a Belousov–Zhabotinsky operated chemical Turing machine Draper, Thomas C. Dueñas-Díez, Marta Pérez-Mercader, Juan RSC Adv Chemistry Chemical reactions are powerful molecular recognition machines. This power has been recently harnessed to build actual instances of each class of experimentally realizable computing automata, using exclusively small-molecule chemistry (i.e. without requiring biomolecules). The most powerful of them, a programmable Turing machine, uses the Belousov–Zhabotinsky oscillatory chemistry, and accepts/rejects input sequences through a dual oscillatory and thermodynamic output signature. The time interval between the aliquots representing each letter of the input is the parameter that determines the time it takes to run the computation. Here, we investigate this critical performance parameter, and its effect not only on the computation speed, but also on the robustness of the accept/reject oscillatory and thermodynamic criteria. Our work demonstrates that the time interval is a non-trivial design parameter, whose choice should be made with great care. The guidelines we provide can be used in the optimization of the speed, robustness, and energy efficiency of chemical automata computations. The Royal Society of Chemistry 2021-07-13 /pmc/articles/PMC9036302/ /pubmed/35480432 http://dx.doi.org/10.1039/d1ra03856g Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by-nc/3.0/
spellingShingle Chemistry
Draper, Thomas C.
Dueñas-Díez, Marta
Pérez-Mercader, Juan
Exploring the symbol processing ‘time interval’ parametric constraint in a Belousov–Zhabotinsky operated chemical Turing machine
title Exploring the symbol processing ‘time interval’ parametric constraint in a Belousov–Zhabotinsky operated chemical Turing machine
title_full Exploring the symbol processing ‘time interval’ parametric constraint in a Belousov–Zhabotinsky operated chemical Turing machine
title_fullStr Exploring the symbol processing ‘time interval’ parametric constraint in a Belousov–Zhabotinsky operated chemical Turing machine
title_full_unstemmed Exploring the symbol processing ‘time interval’ parametric constraint in a Belousov–Zhabotinsky operated chemical Turing machine
title_short Exploring the symbol processing ‘time interval’ parametric constraint in a Belousov–Zhabotinsky operated chemical Turing machine
title_sort exploring the symbol processing ‘time interval’ parametric constraint in a belousov–zhabotinsky operated chemical turing machine
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9036302/
https://www.ncbi.nlm.nih.gov/pubmed/35480432
http://dx.doi.org/10.1039/d1ra03856g
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