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Exploring the symbol processing ‘time interval’ parametric constraint in a Belousov–Zhabotinsky operated chemical Turing machine
Chemical reactions are powerful molecular recognition machines. This power has been recently harnessed to build actual instances of each class of experimentally realizable computing automata, using exclusively small-molecule chemistry (i.e. without requiring biomolecules). The most powerful of them,...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society of Chemistry
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9036302/ https://www.ncbi.nlm.nih.gov/pubmed/35480432 http://dx.doi.org/10.1039/d1ra03856g |
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author | Draper, Thomas C. Dueñas-Díez, Marta Pérez-Mercader, Juan |
author_facet | Draper, Thomas C. Dueñas-Díez, Marta Pérez-Mercader, Juan |
author_sort | Draper, Thomas C. |
collection | PubMed |
description | Chemical reactions are powerful molecular recognition machines. This power has been recently harnessed to build actual instances of each class of experimentally realizable computing automata, using exclusively small-molecule chemistry (i.e. without requiring biomolecules). The most powerful of them, a programmable Turing machine, uses the Belousov–Zhabotinsky oscillatory chemistry, and accepts/rejects input sequences through a dual oscillatory and thermodynamic output signature. The time interval between the aliquots representing each letter of the input is the parameter that determines the time it takes to run the computation. Here, we investigate this critical performance parameter, and its effect not only on the computation speed, but also on the robustness of the accept/reject oscillatory and thermodynamic criteria. Our work demonstrates that the time interval is a non-trivial design parameter, whose choice should be made with great care. The guidelines we provide can be used in the optimization of the speed, robustness, and energy efficiency of chemical automata computations. |
format | Online Article Text |
id | pubmed-9036302 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | The Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-90363022022-04-26 Exploring the symbol processing ‘time interval’ parametric constraint in a Belousov–Zhabotinsky operated chemical Turing machine Draper, Thomas C. Dueñas-Díez, Marta Pérez-Mercader, Juan RSC Adv Chemistry Chemical reactions are powerful molecular recognition machines. This power has been recently harnessed to build actual instances of each class of experimentally realizable computing automata, using exclusively small-molecule chemistry (i.e. without requiring biomolecules). The most powerful of them, a programmable Turing machine, uses the Belousov–Zhabotinsky oscillatory chemistry, and accepts/rejects input sequences through a dual oscillatory and thermodynamic output signature. The time interval between the aliquots representing each letter of the input is the parameter that determines the time it takes to run the computation. Here, we investigate this critical performance parameter, and its effect not only on the computation speed, but also on the robustness of the accept/reject oscillatory and thermodynamic criteria. Our work demonstrates that the time interval is a non-trivial design parameter, whose choice should be made with great care. The guidelines we provide can be used in the optimization of the speed, robustness, and energy efficiency of chemical automata computations. The Royal Society of Chemistry 2021-07-13 /pmc/articles/PMC9036302/ /pubmed/35480432 http://dx.doi.org/10.1039/d1ra03856g Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by-nc/3.0/ |
spellingShingle | Chemistry Draper, Thomas C. Dueñas-Díez, Marta Pérez-Mercader, Juan Exploring the symbol processing ‘time interval’ parametric constraint in a Belousov–Zhabotinsky operated chemical Turing machine |
title | Exploring the symbol processing ‘time interval’ parametric constraint in a Belousov–Zhabotinsky operated chemical Turing machine |
title_full | Exploring the symbol processing ‘time interval’ parametric constraint in a Belousov–Zhabotinsky operated chemical Turing machine |
title_fullStr | Exploring the symbol processing ‘time interval’ parametric constraint in a Belousov–Zhabotinsky operated chemical Turing machine |
title_full_unstemmed | Exploring the symbol processing ‘time interval’ parametric constraint in a Belousov–Zhabotinsky operated chemical Turing machine |
title_short | Exploring the symbol processing ‘time interval’ parametric constraint in a Belousov–Zhabotinsky operated chemical Turing machine |
title_sort | exploring the symbol processing ‘time interval’ parametric constraint in a belousov–zhabotinsky operated chemical turing machine |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9036302/ https://www.ncbi.nlm.nih.gov/pubmed/35480432 http://dx.doi.org/10.1039/d1ra03856g |
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