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Implementation and Optimization of the Embedded Cluster Reference Interaction Site Model with Atomic Charges

[Image: see text] In this work, we implemented the embedded cluster reference interaction site model (EC-RISM) originally developed by Kloss, Heil, and Kast (J. Phys. Chem. B2008, 112, 4337–4343). This method combines quantum mechanical calculations with the 3D reference interaction site model (3D-R...

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Autores principales: Ganyecz, Ádám, Kállay, Mihály
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9036516/
https://www.ncbi.nlm.nih.gov/pubmed/35394778
http://dx.doi.org/10.1021/acs.jpca.1c07904
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author Ganyecz, Ádám
Kállay, Mihály
author_facet Ganyecz, Ádám
Kállay, Mihály
author_sort Ganyecz, Ádám
collection PubMed
description [Image: see text] In this work, we implemented the embedded cluster reference interaction site model (EC-RISM) originally developed by Kloss, Heil, and Kast (J. Phys. Chem. B2008, 112, 4337–4343). This method combines quantum mechanical calculations with the 3D reference interaction site model (3D-RISM). Numerous options, such as buffer, grid space, basis set, charge model, water model, closure relation, and so forth, were investigated to find the best settings. Additionally, the small point charges, which are derived from the solvent distribution from the 3D-RISM solution to represent the solvent in the QM calculation, were neglected to reduce the overhead without the loss of accuracy. On the MNSOL[a], MNSOL, and FreeSolv databases, our implemented and optimized method provides solvation free energies in water with 5.70, 6.32, and 6.44 kJ/mol root-mean-square deviations, respectively, but with different settings, 5.22, 6.08, and 6.63 kJ/mol can also be achieved. Only solvent models containing fitting parameters, like COSMO-RS and EC-RISM with universal correction and directly used electrostatic potential, perform better than our EC-RISM implementation with atomic charges.
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spelling pubmed-90365162022-04-26 Implementation and Optimization of the Embedded Cluster Reference Interaction Site Model with Atomic Charges Ganyecz, Ádám Kállay, Mihály J Phys Chem A [Image: see text] In this work, we implemented the embedded cluster reference interaction site model (EC-RISM) originally developed by Kloss, Heil, and Kast (J. Phys. Chem. B2008, 112, 4337–4343). This method combines quantum mechanical calculations with the 3D reference interaction site model (3D-RISM). Numerous options, such as buffer, grid space, basis set, charge model, water model, closure relation, and so forth, were investigated to find the best settings. Additionally, the small point charges, which are derived from the solvent distribution from the 3D-RISM solution to represent the solvent in the QM calculation, were neglected to reduce the overhead without the loss of accuracy. On the MNSOL[a], MNSOL, and FreeSolv databases, our implemented and optimized method provides solvation free energies in water with 5.70, 6.32, and 6.44 kJ/mol root-mean-square deviations, respectively, but with different settings, 5.22, 6.08, and 6.63 kJ/mol can also be achieved. Only solvent models containing fitting parameters, like COSMO-RS and EC-RISM with universal correction and directly used electrostatic potential, perform better than our EC-RISM implementation with atomic charges. American Chemical Society 2022-04-08 2022-04-21 /pmc/articles/PMC9036516/ /pubmed/35394778 http://dx.doi.org/10.1021/acs.jpca.1c07904 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Ganyecz, Ádám
Kállay, Mihály
Implementation and Optimization of the Embedded Cluster Reference Interaction Site Model with Atomic Charges
title Implementation and Optimization of the Embedded Cluster Reference Interaction Site Model with Atomic Charges
title_full Implementation and Optimization of the Embedded Cluster Reference Interaction Site Model with Atomic Charges
title_fullStr Implementation and Optimization of the Embedded Cluster Reference Interaction Site Model with Atomic Charges
title_full_unstemmed Implementation and Optimization of the Embedded Cluster Reference Interaction Site Model with Atomic Charges
title_short Implementation and Optimization of the Embedded Cluster Reference Interaction Site Model with Atomic Charges
title_sort implementation and optimization of the embedded cluster reference interaction site model with atomic charges
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9036516/
https://www.ncbi.nlm.nih.gov/pubmed/35394778
http://dx.doi.org/10.1021/acs.jpca.1c07904
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