Detecting archaic introgression and modeling multiple-wave admixture with ArchaicSeeker 2.0

ArchaicSeeker 2.0 is designed to identify the sequences derived from known or unknown archaic hominins and to further model the multiple-wave gene flows. The main functional modules involve seeking introgressed sequences, determining corresponding ancestries, and reconstructing the admixture history...

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Detalles Bibliográficos
Autores principales: Zhang, Rui, Yuan, Kai, Xu, Shuhua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Protocol
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9038769/
https://www.ncbi.nlm.nih.gov/pubmed/35496797
http://dx.doi.org/10.1016/j.xpro.2022.101314
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author Zhang, Rui
Yuan, Kai
Xu, Shuhua
author_facet Zhang, Rui
Yuan, Kai
Xu, Shuhua
author_sort Zhang, Rui
collection PubMed
description ArchaicSeeker 2.0 is designed to identify the sequences derived from known or unknown archaic hominins and to further model the multiple-wave gene flows. The main functional modules involve seeking introgressed sequences, determining corresponding ancestries, and reconstructing the admixture history. The protocol below describes the analytic steps for the application of ArchaicSeeker 2.0 into analysis of example data of the Han Chinese population. For complete details on the use and execution of this protocol, please refer to Yuan et al. (2021).
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spelling pubmed-90387692022-04-27 Detecting archaic introgression and modeling multiple-wave admixture with ArchaicSeeker 2.0 Zhang, Rui Yuan, Kai Xu, Shuhua STAR Protoc Protocol ArchaicSeeker 2.0 is designed to identify the sequences derived from known or unknown archaic hominins and to further model the multiple-wave gene flows. The main functional modules involve seeking introgressed sequences, determining corresponding ancestries, and reconstructing the admixture history. The protocol below describes the analytic steps for the application of ArchaicSeeker 2.0 into analysis of example data of the Han Chinese population. For complete details on the use and execution of this protocol, please refer to Yuan et al. (2021). Elsevier 2022-04-14 /pmc/articles/PMC9038769/ /pubmed/35496797 http://dx.doi.org/10.1016/j.xpro.2022.101314 Text en © 2022 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Protocol
Zhang, Rui
Yuan, Kai
Xu, Shuhua
Detecting archaic introgression and modeling multiple-wave admixture with ArchaicSeeker 2.0
title Detecting archaic introgression and modeling multiple-wave admixture with ArchaicSeeker 2.0
title_full Detecting archaic introgression and modeling multiple-wave admixture with ArchaicSeeker 2.0
title_fullStr Detecting archaic introgression and modeling multiple-wave admixture with ArchaicSeeker 2.0
title_full_unstemmed Detecting archaic introgression and modeling multiple-wave admixture with ArchaicSeeker 2.0
title_short Detecting archaic introgression and modeling multiple-wave admixture with ArchaicSeeker 2.0
title_sort detecting archaic introgression and modeling multiple-wave admixture with archaicseeker 2.0
topic Protocol
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9038769/
https://www.ncbi.nlm.nih.gov/pubmed/35496797
http://dx.doi.org/10.1016/j.xpro.2022.101314
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