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Unveiling OASIS family as a key player in hypoxia–ischemia cases induced by cocaine using generative adversarial networks
Repeated cocaine use poses many serious health risks to users. One of the risks is hypoxia and ischemia (HI). To restore the biological system against HI, complex biological mechanisms operate at the gene level. Despite the complexity of biological mechanisms, there are common denominator genes that...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9038918/ https://www.ncbi.nlm.nih.gov/pubmed/35469040 http://dx.doi.org/10.1038/s41598-022-10772-1 |
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author | Lee, Kyoungmin Kim, Taehyeong Cheon, Mookyung Yu, Wookyung |
author_facet | Lee, Kyoungmin Kim, Taehyeong Cheon, Mookyung Yu, Wookyung |
author_sort | Lee, Kyoungmin |
collection | PubMed |
description | Repeated cocaine use poses many serious health risks to users. One of the risks is hypoxia and ischemia (HI). To restore the biological system against HI, complex biological mechanisms operate at the gene level. Despite the complexity of biological mechanisms, there are common denominator genes that play pivotal roles in various defense systems. Among these genes, the cAMP response element-binding (Creb) protein contributes not only to various aspects of drug-seeking behavior and drug reward, but also to protective mechanisms. However, it is still unclear which Creb members are key players in the protection of cocaine-induced HI conditions. Herein, using one of the state-of-the-art deep learning methods, the generative adversarial network, we revealed that the OASIS family, one of the Creb family, is a key player in various defense mechanisms such as angiogenesis and unfolded protein response against the HI state by unveiling hidden mRNA expression profiles. Furthermore, we identified mysterious kinases in the OASIS family and are able to explain why the prefrontal cortex and hippocampus are vulnerable to HI at the genetic level. |
format | Online Article Text |
id | pubmed-9038918 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-90389182022-04-27 Unveiling OASIS family as a key player in hypoxia–ischemia cases induced by cocaine using generative adversarial networks Lee, Kyoungmin Kim, Taehyeong Cheon, Mookyung Yu, Wookyung Sci Rep Article Repeated cocaine use poses many serious health risks to users. One of the risks is hypoxia and ischemia (HI). To restore the biological system against HI, complex biological mechanisms operate at the gene level. Despite the complexity of biological mechanisms, there are common denominator genes that play pivotal roles in various defense systems. Among these genes, the cAMP response element-binding (Creb) protein contributes not only to various aspects of drug-seeking behavior and drug reward, but also to protective mechanisms. However, it is still unclear which Creb members are key players in the protection of cocaine-induced HI conditions. Herein, using one of the state-of-the-art deep learning methods, the generative adversarial network, we revealed that the OASIS family, one of the Creb family, is a key player in various defense mechanisms such as angiogenesis and unfolded protein response against the HI state by unveiling hidden mRNA expression profiles. Furthermore, we identified mysterious kinases in the OASIS family and are able to explain why the prefrontal cortex and hippocampus are vulnerable to HI at the genetic level. Nature Publishing Group UK 2022-04-25 /pmc/articles/PMC9038918/ /pubmed/35469040 http://dx.doi.org/10.1038/s41598-022-10772-1 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Lee, Kyoungmin Kim, Taehyeong Cheon, Mookyung Yu, Wookyung Unveiling OASIS family as a key player in hypoxia–ischemia cases induced by cocaine using generative adversarial networks |
title | Unveiling OASIS family as a key player in hypoxia–ischemia cases induced by cocaine using generative adversarial networks |
title_full | Unveiling OASIS family as a key player in hypoxia–ischemia cases induced by cocaine using generative adversarial networks |
title_fullStr | Unveiling OASIS family as a key player in hypoxia–ischemia cases induced by cocaine using generative adversarial networks |
title_full_unstemmed | Unveiling OASIS family as a key player in hypoxia–ischemia cases induced by cocaine using generative adversarial networks |
title_short | Unveiling OASIS family as a key player in hypoxia–ischemia cases induced by cocaine using generative adversarial networks |
title_sort | unveiling oasis family as a key player in hypoxia–ischemia cases induced by cocaine using generative adversarial networks |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9038918/ https://www.ncbi.nlm.nih.gov/pubmed/35469040 http://dx.doi.org/10.1038/s41598-022-10772-1 |
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