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The macroscopic limit to synchronization of cellular clocks in single cells of Neurospora crassa

We determined the macroscopic limit for phase synchronization of cellular clocks in an artificial tissue created by a “big chamber” microfluidic device to be about 150,000 cells or less. The dimensions of the microfluidic chamber allowed us to calculate an upper limit on the radius of a hypothesized...

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Autores principales: Cheong, Jia Hwei, Qiu, Xiao, Liu, Yang, Al-Omari, Ahmad, Griffith, James, Schüttler, Heinz-Bernd, Mao, Leidong, Arnold, Jonathan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9039089/
https://www.ncbi.nlm.nih.gov/pubmed/35468928
http://dx.doi.org/10.1038/s41598-022-10612-2
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author Cheong, Jia Hwei
Qiu, Xiao
Liu, Yang
Al-Omari, Ahmad
Griffith, James
Schüttler, Heinz-Bernd
Mao, Leidong
Arnold, Jonathan
author_facet Cheong, Jia Hwei
Qiu, Xiao
Liu, Yang
Al-Omari, Ahmad
Griffith, James
Schüttler, Heinz-Bernd
Mao, Leidong
Arnold, Jonathan
author_sort Cheong, Jia Hwei
collection PubMed
description We determined the macroscopic limit for phase synchronization of cellular clocks in an artificial tissue created by a “big chamber” microfluidic device to be about 150,000 cells or less. The dimensions of the microfluidic chamber allowed us to calculate an upper limit on the radius of a hypothesized quorum sensing signal molecule of 13.05 nm using a diffusion approximation for signal travel within the device. The use of a second microwell microfluidic device allowed the refinement of the macroscopic limit to a cell density of 2166 cells per fixed area of the device for phase synchronization. The measurement of averages over single cell trajectories in the microwell device supported a deterministic quorum sensing model identified by ensemble methods for clock phase synchronization. A strong inference framework was used to test the communication mechanism in phase synchronization of quorum sensing versus cell-to-cell contact, suggesting support for quorum sensing. Further evidence came from showing phase synchronization was density-dependent.
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spelling pubmed-90390892022-04-27 The macroscopic limit to synchronization of cellular clocks in single cells of Neurospora crassa Cheong, Jia Hwei Qiu, Xiao Liu, Yang Al-Omari, Ahmad Griffith, James Schüttler, Heinz-Bernd Mao, Leidong Arnold, Jonathan Sci Rep Article We determined the macroscopic limit for phase synchronization of cellular clocks in an artificial tissue created by a “big chamber” microfluidic device to be about 150,000 cells or less. The dimensions of the microfluidic chamber allowed us to calculate an upper limit on the radius of a hypothesized quorum sensing signal molecule of 13.05 nm using a diffusion approximation for signal travel within the device. The use of a second microwell microfluidic device allowed the refinement of the macroscopic limit to a cell density of 2166 cells per fixed area of the device for phase synchronization. The measurement of averages over single cell trajectories in the microwell device supported a deterministic quorum sensing model identified by ensemble methods for clock phase synchronization. A strong inference framework was used to test the communication mechanism in phase synchronization of quorum sensing versus cell-to-cell contact, suggesting support for quorum sensing. Further evidence came from showing phase synchronization was density-dependent. Nature Publishing Group UK 2022-04-25 /pmc/articles/PMC9039089/ /pubmed/35468928 http://dx.doi.org/10.1038/s41598-022-10612-2 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Cheong, Jia Hwei
Qiu, Xiao
Liu, Yang
Al-Omari, Ahmad
Griffith, James
Schüttler, Heinz-Bernd
Mao, Leidong
Arnold, Jonathan
The macroscopic limit to synchronization of cellular clocks in single cells of Neurospora crassa
title The macroscopic limit to synchronization of cellular clocks in single cells of Neurospora crassa
title_full The macroscopic limit to synchronization of cellular clocks in single cells of Neurospora crassa
title_fullStr The macroscopic limit to synchronization of cellular clocks in single cells of Neurospora crassa
title_full_unstemmed The macroscopic limit to synchronization of cellular clocks in single cells of Neurospora crassa
title_short The macroscopic limit to synchronization of cellular clocks in single cells of Neurospora crassa
title_sort macroscopic limit to synchronization of cellular clocks in single cells of neurospora crassa
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9039089/
https://www.ncbi.nlm.nih.gov/pubmed/35468928
http://dx.doi.org/10.1038/s41598-022-10612-2
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