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The macroscopic limit to synchronization of cellular clocks in single cells of Neurospora crassa
We determined the macroscopic limit for phase synchronization of cellular clocks in an artificial tissue created by a “big chamber” microfluidic device to be about 150,000 cells or less. The dimensions of the microfluidic chamber allowed us to calculate an upper limit on the radius of a hypothesized...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9039089/ https://www.ncbi.nlm.nih.gov/pubmed/35468928 http://dx.doi.org/10.1038/s41598-022-10612-2 |
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author | Cheong, Jia Hwei Qiu, Xiao Liu, Yang Al-Omari, Ahmad Griffith, James Schüttler, Heinz-Bernd Mao, Leidong Arnold, Jonathan |
author_facet | Cheong, Jia Hwei Qiu, Xiao Liu, Yang Al-Omari, Ahmad Griffith, James Schüttler, Heinz-Bernd Mao, Leidong Arnold, Jonathan |
author_sort | Cheong, Jia Hwei |
collection | PubMed |
description | We determined the macroscopic limit for phase synchronization of cellular clocks in an artificial tissue created by a “big chamber” microfluidic device to be about 150,000 cells or less. The dimensions of the microfluidic chamber allowed us to calculate an upper limit on the radius of a hypothesized quorum sensing signal molecule of 13.05 nm using a diffusion approximation for signal travel within the device. The use of a second microwell microfluidic device allowed the refinement of the macroscopic limit to a cell density of 2166 cells per fixed area of the device for phase synchronization. The measurement of averages over single cell trajectories in the microwell device supported a deterministic quorum sensing model identified by ensemble methods for clock phase synchronization. A strong inference framework was used to test the communication mechanism in phase synchronization of quorum sensing versus cell-to-cell contact, suggesting support for quorum sensing. Further evidence came from showing phase synchronization was density-dependent. |
format | Online Article Text |
id | pubmed-9039089 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-90390892022-04-27 The macroscopic limit to synchronization of cellular clocks in single cells of Neurospora crassa Cheong, Jia Hwei Qiu, Xiao Liu, Yang Al-Omari, Ahmad Griffith, James Schüttler, Heinz-Bernd Mao, Leidong Arnold, Jonathan Sci Rep Article We determined the macroscopic limit for phase synchronization of cellular clocks in an artificial tissue created by a “big chamber” microfluidic device to be about 150,000 cells or less. The dimensions of the microfluidic chamber allowed us to calculate an upper limit on the radius of a hypothesized quorum sensing signal molecule of 13.05 nm using a diffusion approximation for signal travel within the device. The use of a second microwell microfluidic device allowed the refinement of the macroscopic limit to a cell density of 2166 cells per fixed area of the device for phase synchronization. The measurement of averages over single cell trajectories in the microwell device supported a deterministic quorum sensing model identified by ensemble methods for clock phase synchronization. A strong inference framework was used to test the communication mechanism in phase synchronization of quorum sensing versus cell-to-cell contact, suggesting support for quorum sensing. Further evidence came from showing phase synchronization was density-dependent. Nature Publishing Group UK 2022-04-25 /pmc/articles/PMC9039089/ /pubmed/35468928 http://dx.doi.org/10.1038/s41598-022-10612-2 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Cheong, Jia Hwei Qiu, Xiao Liu, Yang Al-Omari, Ahmad Griffith, James Schüttler, Heinz-Bernd Mao, Leidong Arnold, Jonathan The macroscopic limit to synchronization of cellular clocks in single cells of Neurospora crassa |
title | The macroscopic limit to synchronization of cellular clocks in single cells of Neurospora crassa |
title_full | The macroscopic limit to synchronization of cellular clocks in single cells of Neurospora crassa |
title_fullStr | The macroscopic limit to synchronization of cellular clocks in single cells of Neurospora crassa |
title_full_unstemmed | The macroscopic limit to synchronization of cellular clocks in single cells of Neurospora crassa |
title_short | The macroscopic limit to synchronization of cellular clocks in single cells of Neurospora crassa |
title_sort | macroscopic limit to synchronization of cellular clocks in single cells of neurospora crassa |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9039089/ https://www.ncbi.nlm.nih.gov/pubmed/35468928 http://dx.doi.org/10.1038/s41598-022-10612-2 |
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