Cargando…

The Arabidopsis gene co‐expression network

Identifying genes that interact to confer a biological function to an organism is one of the main goals of functional genomics. High‐throughput technologies for assessment and quantification of genome‐wide gene expression patterns have enabled systems‐level analyses to infer pathways or networks of...

Descripción completa

Detalles Bibliográficos
Autores principales:	Burks, David J., Sengupta, Soham, De, Ronika, Mittler, Ron, Azad, Rajeev K.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	John Wiley and Sons Inc. 2022
Materias:	Original Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9039629/ https://www.ncbi.nlm.nih.gov/pubmed/35492683 http://dx.doi.org/10.1002/pld3.396

Ejemplares similares

Identification and characterization of a core set of ROS wave‐associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light
por: Zandalinas, Sara I., et al.
Publicado: (2019)

Reconstructing horizontal gene flow network to understand prokaryotic evolution
por: Sengupta, Soham, et al.
Publicado: (2022)

Lipophilic signals lead to organ‐specific gene expression changes in Arabidopsis seedlings
por: Cannon, Ashley E., et al.
Publicado: (2020)

Analysis of transcribed sequences from young and mature zebrafish thrombocytes
por: Fallatah, Weam, et al.
Publicado: (2022)

The impact of multifactorial stress combination on plant growth and survival
por: Zandalinas, Sara I., et al.
Publicado: (2021)

Systemic signaling during abiotic stress combination in plants
por: Zandalinas, Sara I., et al.
Publicado: (2020)

Phylogenetic analysis of eukaryotic NEET proteins uncovers a link between a key gene duplication event and the evolution of vertebrates
por: Inupakutika, Madhuri A., et al.
Publicado: (2017)

Identification and Network-Enabled Characterization of Auxin Response Factor Genes in Medicago truncatula
por: Burks, David J., et al.
Publicado: (2016)

Leveraging comparative genomics to uncover alien genes in bacterial genomes
por: Sengupta, Soham, et al.
Publicado: (2023)

Phylogenetic analysis of the CDGSH iron-sulfur binding domain reveals its ancient origin
por: Sengupta, Soham, et al.
Publicado: (2018)

Molecular signatures in the progression of COVID-19 severity
por: De, Ronika, et al.
Publicado: (2022)

Deciphering pathogenicity and antibiotic resistance islands in methicillin-resistant Staphylococcus aureus genomes
por: Jani, Mehul, et al.
Publicado: (2017)

Arabidopsis gene co-expression network and its functional modules
por: Mao, Linyong, et al.
Publicado: (2009)

POSMM: an efficient alignment-free metagenomic profiler that complements alignment-based profiling
por: Burks, David J., et al.
Publicado: (2023)

From gene expression to gene regulatory networks in Arabidopsis thaliana
por: Needham, Chris J, et al.
Publicado: (2009)

Discovery of Core Biotic Stress Responsive Genes in Arabidopsis by Weighted Gene Co-Expression Network Analysis
por: Amrine, Katherine C. H., et al.
Publicado: (2015)

Enhanced seed production under prolonged heat stress conditions in Arabidopsis thaliana plants deficient in cytosolic ascorbate peroxidase 2
por: Suzuki, Nobuhiro, et al.
Publicado: (2013)

Environmental vibrios represent a source of antagonistic compounds that inhibit pathogenic Vibrio cholerae and Vibrio parahaemolyticus strains
por: Burks, David J., et al.
Publicado: (2017)

Ultra‐fast alterations in mRNA levels uncover multiple players in light stress acclimation in plants
por: Suzuki, Nobuhiro, et al.
Publicado: (2015)

Genome-scale identification of cell-wall related genes in Arabidopsis based on co-expression network analysis
por: Wang, Shan, et al.
Publicado: (2012)

Function Annotation of an SBP-box Gene in Arabidopsis Based on Analysis of Co-expression Networks and Promoters
por: Wang, Yi, et al.
Publicado: (2009)

A gene co-expression network predicts functional genes controlling the re-establishment of desiccation tolerance in germinated Arabidopsis thaliana seeds
por: Costa, Maria Cecília D., et al.
Publicado: (2015)

Co-expression of neighbouring genes in Arabidopsis: separating chromatin effects from direct interactions
por: Chen, Wei-Hua, et al.
Publicado: (2010)

Parallel expression evolution of oxidative stress-related genes in fiber from wild and domesticated diploid and polyploid cotton (Gossypium)
por: Chaudhary, Bhupendra, et al.
Publicado: (2009)

Identification of gene expression logical invariants in Arabidopsis
por: Pandey, Sonalisa, et al.
Publicado: (2019)

Cold-responsive transcription factors in Arabidopsis and rice: A regulatory network analysis using array data and gene co-expression network
por: Edrisi Maryan, Khazar, et al.
Publicado: (2023)

CancerNet: a unified deep learning network for pan-cancer diagnostics
por: Gore, Steven, et al.
Publicado: (2022)

Weighted gene co-expression network analysis unveils gene networks associated with the Fusarium head blight resistance in tetraploid wheat
por: Sari, Ehsan, et al.
Publicado: (2019)

Conserved Non-Coding Regulatory Signatures in Arabidopsis Co-Expressed Gene Modules
por: Spangler, Jacob B., et al.
Publicado: (2012)

SeqEnrich: A tool to predict transcription factor networks from co-expressed Arabidopsis and Brassica napus gene sets
por: Becker, Michael G., et al.
Publicado: (2017)

Characterization of WRKY co-regulatory networks in rice and Arabidopsis
por: Berri, Stefano, et al.
Publicado: (2009)

Regulatory dynamics of gene expression in the developing male gametophyte of Arabidopsis
por: Klodová, Božena, et al.
Publicado: (2022)

Role of ribosomal RNA released from red cells in blood coagulation in zebrafish and humans
por: Alharbi, Abdulmajeed, et al.
Publicado: (2021)

Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression
por: De Bodt, Stefanie, et al.
Publicado: (2009)

Dissection of Regulatory Networks that Are Altered in Disease via Differential Co-expression
por: Amar, David, et al.
Publicado: (2013)

Genes and Co-Expression Modules Common to Drought and Bacterial Stress Responses in Arabidopsis and Rice
por: Shaik, Rafi, et al.
Publicado: (2013)

Protein-protein interaction and gene co-expression maps of ARFs and Aux/IAAs in Arabidopsis
por: Piya, Sarbottam, et al.
Publicado: (2014)

Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis
por: Manfield, Iain W., et al.
Publicado: (2006)

Identification of novel motif patterns to decipher the promoter architecture of co-expressed genes in Arabidopsis thaliana
por: López, Yosvany, et al.
Publicado: (2013)

The Cluster Transfer Function of AtNEET Supports the Ferredoxin–Thioredoxin Network of Plant Cells
por: Zandalinas, Sara I., et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_ibhm32v7bb3u9uknencqadp5d9