Cargando…
A pancancer analysis of the carcinogenic role of receptor-interacting serine/threonine protein kinase-2 (RIPK2) in human tumours
BACKGROUND: To explore the expression and carcinogenic mechanism of RIPK2 in human tumours, and to provide the theoretical basis for the further study of RIPK2. METHODS: We used the TCGA, CPTAC, HPA databases to analyse the expression, mutation, and prognosis of RIPK2 in human tumours. Through the C...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9040268/ https://www.ncbi.nlm.nih.gov/pubmed/35473583 http://dx.doi.org/10.1186/s12920-022-01239-3 |
_version_ | 1784694300768993280 |
---|---|
author | Zhang, Hanqun Ma, Yan Zhang, Qiuning Liu, Ruifeng Luo, Hongtao Wang, Xiaohu |
author_facet | Zhang, Hanqun Ma, Yan Zhang, Qiuning Liu, Ruifeng Luo, Hongtao Wang, Xiaohu |
author_sort | Zhang, Hanqun |
collection | PubMed |
description | BACKGROUND: To explore the expression and carcinogenic mechanism of RIPK2 in human tumours, and to provide the theoretical basis for the further study of RIPK2. METHODS: We used the TCGA, CPTAC, HPA databases to analyse the expression, mutation, and prognosis of RIPK2 in human tumours. Through the Cbioportal, Ualcan, TIMER2.0, and STRING websites, We understand the genetic variation, immune infiltration and enrichment analysis of RIPK2 related genes. RESULTS: RIPK2 was highly expressed in most tumours (such as BRCA, COAD and LUSC, etc.), and the high expression of RIPK2 was correlated with tumour stage and prognosis. In addition, Amplification was the main type of RIPK2 in tumour mutation state, and the amplification rate was about 8.5%. In addition, RIPK2 was positively associated with tumour-infiltrating immune cells (such as CD8+ T, Tregs, and cancer-associated fibroblasts). According to the KEGG analysis, RIPK2 may play a role in tumour mainly through NOD-like signaling pathway and NF-kappaB signaling pathway. GO enrichment analysis showed that the RIPK2 is mainly related to I-kappaB kinase/NF-kappaB signaling, Ribonucleoprotein granule and Ubiquitin-like protein ligase binding. CONCLUSION: RIPK2 plays an important role in the occurrence, development and prognosis of malignant tumours. Our pancancer study provided a relatively comprehensive description of the carcinogenic effects of RIPK2 in different tumours, and provided useful information for further study of RIPK2. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12920-022-01239-3. |
format | Online Article Text |
id | pubmed-9040268 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-90402682022-04-27 A pancancer analysis of the carcinogenic role of receptor-interacting serine/threonine protein kinase-2 (RIPK2) in human tumours Zhang, Hanqun Ma, Yan Zhang, Qiuning Liu, Ruifeng Luo, Hongtao Wang, Xiaohu BMC Med Genomics Research BACKGROUND: To explore the expression and carcinogenic mechanism of RIPK2 in human tumours, and to provide the theoretical basis for the further study of RIPK2. METHODS: We used the TCGA, CPTAC, HPA databases to analyse the expression, mutation, and prognosis of RIPK2 in human tumours. Through the Cbioportal, Ualcan, TIMER2.0, and STRING websites, We understand the genetic variation, immune infiltration and enrichment analysis of RIPK2 related genes. RESULTS: RIPK2 was highly expressed in most tumours (such as BRCA, COAD and LUSC, etc.), and the high expression of RIPK2 was correlated with tumour stage and prognosis. In addition, Amplification was the main type of RIPK2 in tumour mutation state, and the amplification rate was about 8.5%. In addition, RIPK2 was positively associated with tumour-infiltrating immune cells (such as CD8+ T, Tregs, and cancer-associated fibroblasts). According to the KEGG analysis, RIPK2 may play a role in tumour mainly through NOD-like signaling pathway and NF-kappaB signaling pathway. GO enrichment analysis showed that the RIPK2 is mainly related to I-kappaB kinase/NF-kappaB signaling, Ribonucleoprotein granule and Ubiquitin-like protein ligase binding. CONCLUSION: RIPK2 plays an important role in the occurrence, development and prognosis of malignant tumours. Our pancancer study provided a relatively comprehensive description of the carcinogenic effects of RIPK2 in different tumours, and provided useful information for further study of RIPK2. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12920-022-01239-3. BioMed Central 2022-04-26 /pmc/articles/PMC9040268/ /pubmed/35473583 http://dx.doi.org/10.1186/s12920-022-01239-3 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Zhang, Hanqun Ma, Yan Zhang, Qiuning Liu, Ruifeng Luo, Hongtao Wang, Xiaohu A pancancer analysis of the carcinogenic role of receptor-interacting serine/threonine protein kinase-2 (RIPK2) in human tumours |
title | A pancancer analysis of the carcinogenic role of receptor-interacting serine/threonine protein kinase-2 (RIPK2) in human tumours |
title_full | A pancancer analysis of the carcinogenic role of receptor-interacting serine/threonine protein kinase-2 (RIPK2) in human tumours |
title_fullStr | A pancancer analysis of the carcinogenic role of receptor-interacting serine/threonine protein kinase-2 (RIPK2) in human tumours |
title_full_unstemmed | A pancancer analysis of the carcinogenic role of receptor-interacting serine/threonine protein kinase-2 (RIPK2) in human tumours |
title_short | A pancancer analysis of the carcinogenic role of receptor-interacting serine/threonine protein kinase-2 (RIPK2) in human tumours |
title_sort | pancancer analysis of the carcinogenic role of receptor-interacting serine/threonine protein kinase-2 (ripk2) in human tumours |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9040268/ https://www.ncbi.nlm.nih.gov/pubmed/35473583 http://dx.doi.org/10.1186/s12920-022-01239-3 |
work_keys_str_mv | AT zhanghanqun apancanceranalysisofthecarcinogenicroleofreceptorinteractingserinethreonineproteinkinase2ripk2inhumantumours AT mayan apancanceranalysisofthecarcinogenicroleofreceptorinteractingserinethreonineproteinkinase2ripk2inhumantumours AT zhangqiuning apancanceranalysisofthecarcinogenicroleofreceptorinteractingserinethreonineproteinkinase2ripk2inhumantumours AT liuruifeng apancanceranalysisofthecarcinogenicroleofreceptorinteractingserinethreonineproteinkinase2ripk2inhumantumours AT luohongtao apancanceranalysisofthecarcinogenicroleofreceptorinteractingserinethreonineproteinkinase2ripk2inhumantumours AT wangxiaohu apancanceranalysisofthecarcinogenicroleofreceptorinteractingserinethreonineproteinkinase2ripk2inhumantumours AT zhanghanqun pancanceranalysisofthecarcinogenicroleofreceptorinteractingserinethreonineproteinkinase2ripk2inhumantumours AT mayan pancanceranalysisofthecarcinogenicroleofreceptorinteractingserinethreonineproteinkinase2ripk2inhumantumours AT zhangqiuning pancanceranalysisofthecarcinogenicroleofreceptorinteractingserinethreonineproteinkinase2ripk2inhumantumours AT liuruifeng pancanceranalysisofthecarcinogenicroleofreceptorinteractingserinethreonineproteinkinase2ripk2inhumantumours AT luohongtao pancanceranalysisofthecarcinogenicroleofreceptorinteractingserinethreonineproteinkinase2ripk2inhumantumours AT wangxiaohu pancanceranalysisofthecarcinogenicroleofreceptorinteractingserinethreonineproteinkinase2ripk2inhumantumours |