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Clinical validation of a next-generation sequencing-based multi-cancer early detection “liquid biopsy” blood test in over 1,000 dogs using an independent testing set: The CANcer Detection in Dogs (CANDiD) study

Cancer is the leading cause of death in dogs, yet there are no established screening paradigms for early detection. Liquid biopsy methods that interrogate cancer-derived genomic alterations in cell-free DNA in blood are being adopted for multi-cancer early detection in human medicine and are now ava...

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Autores principales: Flory, Andi, Kruglyak, Kristina M., Tynan, John A., McLennan, Lisa M., Rafalko, Jill M., Fiaux, Patrick Christian, Hernandez, Gilberto E., Marass, Francesco, Nakashe, Prachi, Ruiz-Perez, Carlos A., Fath, Donna M., Jennings, Thuy, Motalli-Pepio, Rita, Wotrang, Kate, McCleary-Wheeler, Angela L., Lana, Susan, Phillips, Brenda, Flesner, Brian K., Leibman, Nicole F., LaDue, Tracy, Tripp, Chelsea D., Coomber, Brenda L., Woods, J. Paul, Miller, Mairin, Aiken, Sean W., Wolf-Ringwall, Amber, Borgatti, Antonella, Kraska, Kathleen, Thomson, Christopher B., Kosanovich Cahalane, Alane, Murray, Rebecca L., Kisseberth, William C., Camps-Palau, Maria A., Floch, Franck, Beaudu-Lange, Claire, Klajer-Peres, Aurélia, Keravel, Olivier, Fribourg-Blanc, Luc-André, Mazetier, Pascale Chicha, Marco, Angelo, McLeod, Molly B., Portillo, Erin, Clark, Terry S., Judd, Scott, Feinberg, C. Kirk, Benitez, Marie, Runyan, Candace, Hackett, Lindsey, Lafey, Scott, Richardson, Danielle, Vineyard, Sarah, Tefend Campbell, Mary, Dharajiya, Nilesh, Jensen, Taylor J., van den Boom, Dirk, Diaz, Luis A., Grosu, Daniel S., Polk, Arthur, Marsal, Kalle, Hicks, Susan Cho, Lytle, Katherine M., Holtvoigt, Lauren, Chibuk, Jason, Chorny, Ilya, Tsui, Dana W. Y.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9041869/
https://www.ncbi.nlm.nih.gov/pubmed/35471999
http://dx.doi.org/10.1371/journal.pone.0266623
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author Flory, Andi
Kruglyak, Kristina M.
Tynan, John A.
McLennan, Lisa M.
Rafalko, Jill M.
Fiaux, Patrick Christian
Hernandez, Gilberto E.
Marass, Francesco
Nakashe, Prachi
Ruiz-Perez, Carlos A.
Fath, Donna M.
Jennings, Thuy
Motalli-Pepio, Rita
Wotrang, Kate
McCleary-Wheeler, Angela L.
Lana, Susan
Phillips, Brenda
Flesner, Brian K.
Leibman, Nicole F.
LaDue, Tracy
Tripp, Chelsea D.
Coomber, Brenda L.
Woods, J. Paul
Miller, Mairin
Aiken, Sean W.
Wolf-Ringwall, Amber
Borgatti, Antonella
Kraska, Kathleen
Thomson, Christopher B.
Kosanovich Cahalane, Alane
Murray, Rebecca L.
Kisseberth, William C.
Camps-Palau, Maria A.
Floch, Franck
Beaudu-Lange, Claire
Klajer-Peres, Aurélia
Keravel, Olivier
Fribourg-Blanc, Luc-André
Mazetier, Pascale Chicha
Marco, Angelo
McLeod, Molly B.
Portillo, Erin
Clark, Terry S.
Judd, Scott
Feinberg, C. Kirk
Benitez, Marie
Runyan, Candace
Hackett, Lindsey
Lafey, Scott
Richardson, Danielle
Vineyard, Sarah
Tefend Campbell, Mary
Dharajiya, Nilesh
Jensen, Taylor J.
van den Boom, Dirk
Diaz, Luis A.
Grosu, Daniel S.
Polk, Arthur
Marsal, Kalle
Hicks, Susan Cho
Lytle, Katherine M.
Holtvoigt, Lauren
Chibuk, Jason
Chorny, Ilya
Tsui, Dana W. Y.
author_facet Flory, Andi
Kruglyak, Kristina M.
Tynan, John A.
McLennan, Lisa M.
Rafalko, Jill M.
Fiaux, Patrick Christian
Hernandez, Gilberto E.
Marass, Francesco
Nakashe, Prachi
Ruiz-Perez, Carlos A.
Fath, Donna M.
Jennings, Thuy
Motalli-Pepio, Rita
Wotrang, Kate
McCleary-Wheeler, Angela L.
Lana, Susan
Phillips, Brenda
Flesner, Brian K.
Leibman, Nicole F.
LaDue, Tracy
Tripp, Chelsea D.
Coomber, Brenda L.
Woods, J. Paul
Miller, Mairin
Aiken, Sean W.
Wolf-Ringwall, Amber
Borgatti, Antonella
Kraska, Kathleen
Thomson, Christopher B.
Kosanovich Cahalane, Alane
Murray, Rebecca L.
Kisseberth, William C.
Camps-Palau, Maria A.
Floch, Franck
Beaudu-Lange, Claire
Klajer-Peres, Aurélia
Keravel, Olivier
Fribourg-Blanc, Luc-André
Mazetier, Pascale Chicha
Marco, Angelo
McLeod, Molly B.
Portillo, Erin
Clark, Terry S.
Judd, Scott
Feinberg, C. Kirk
Benitez, Marie
Runyan, Candace
Hackett, Lindsey
Lafey, Scott
Richardson, Danielle
Vineyard, Sarah
Tefend Campbell, Mary
Dharajiya, Nilesh
Jensen, Taylor J.
van den Boom, Dirk
Diaz, Luis A.
Grosu, Daniel S.
Polk, Arthur
Marsal, Kalle
Hicks, Susan Cho
Lytle, Katherine M.
Holtvoigt, Lauren
Chibuk, Jason
Chorny, Ilya
Tsui, Dana W. Y.
author_sort Flory, Andi
collection PubMed
description Cancer is the leading cause of death in dogs, yet there are no established screening paradigms for early detection. Liquid biopsy methods that interrogate cancer-derived genomic alterations in cell-free DNA in blood are being adopted for multi-cancer early detection in human medicine and are now available for veterinary use. The CANcer Detection in Dogs (CANDiD) study is an international, multi-center clinical study designed to validate the performance of a novel multi-cancer early detection “liquid biopsy” test developed for noninvasive detection and characterization of cancer in dogs using next-generation sequencing (NGS) of blood-derived DNA; study results are reported here. In total, 1,358 cancer-diagnosed and presumably cancer-free dogs were enrolled in the study, representing the range of breeds, weights, ages, and cancer types seen in routine clinical practice; 1,100 subjects met inclusion criteria for analysis and were used in the validation of the test. Overall, the liquid biopsy test demonstrated a 54.7% (95% CI: 49.3–60.0%) sensitivity and a 98.5% (95% CI: 97.0–99.3%) specificity. For three of the most aggressive canine cancers (lymphoma, hemangiosarcoma, osteosarcoma), the detection rate was 85.4% (95% CI: 78.4–90.9%); and for eight of the most common canine cancers (lymphoma, hemangiosarcoma, osteosarcoma, soft tissue sarcoma, mast cell tumor, mammary gland carcinoma, anal sac adenocarcinoma, malignant melanoma), the detection rate was 61.9% (95% CI: 55.3–68.1%). The test detected cancer signal in patients representing 30 distinct cancer types and provided a Cancer Signal Origin prediction for a subset of patients with hematological malignancies. Furthermore, the test accurately detected cancer signal in four presumably cancer-free subjects before the onset of clinical signs, further supporting the utility of liquid biopsy as an early detection test. Taken together, these findings demonstrate that NGS-based liquid biopsy can offer a novel option for noninvasive multi-cancer detection in dogs.
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spelling pubmed-90418692022-04-27 Clinical validation of a next-generation sequencing-based multi-cancer early detection “liquid biopsy” blood test in over 1,000 dogs using an independent testing set: The CANcer Detection in Dogs (CANDiD) study Flory, Andi Kruglyak, Kristina M. Tynan, John A. McLennan, Lisa M. Rafalko, Jill M. Fiaux, Patrick Christian Hernandez, Gilberto E. Marass, Francesco Nakashe, Prachi Ruiz-Perez, Carlos A. Fath, Donna M. Jennings, Thuy Motalli-Pepio, Rita Wotrang, Kate McCleary-Wheeler, Angela L. Lana, Susan Phillips, Brenda Flesner, Brian K. Leibman, Nicole F. LaDue, Tracy Tripp, Chelsea D. Coomber, Brenda L. Woods, J. Paul Miller, Mairin Aiken, Sean W. Wolf-Ringwall, Amber Borgatti, Antonella Kraska, Kathleen Thomson, Christopher B. Kosanovich Cahalane, Alane Murray, Rebecca L. Kisseberth, William C. Camps-Palau, Maria A. Floch, Franck Beaudu-Lange, Claire Klajer-Peres, Aurélia Keravel, Olivier Fribourg-Blanc, Luc-André Mazetier, Pascale Chicha Marco, Angelo McLeod, Molly B. Portillo, Erin Clark, Terry S. Judd, Scott Feinberg, C. Kirk Benitez, Marie Runyan, Candace Hackett, Lindsey Lafey, Scott Richardson, Danielle Vineyard, Sarah Tefend Campbell, Mary Dharajiya, Nilesh Jensen, Taylor J. van den Boom, Dirk Diaz, Luis A. Grosu, Daniel S. Polk, Arthur Marsal, Kalle Hicks, Susan Cho Lytle, Katherine M. Holtvoigt, Lauren Chibuk, Jason Chorny, Ilya Tsui, Dana W. Y. PLoS One Research Article Cancer is the leading cause of death in dogs, yet there are no established screening paradigms for early detection. Liquid biopsy methods that interrogate cancer-derived genomic alterations in cell-free DNA in blood are being adopted for multi-cancer early detection in human medicine and are now available for veterinary use. The CANcer Detection in Dogs (CANDiD) study is an international, multi-center clinical study designed to validate the performance of a novel multi-cancer early detection “liquid biopsy” test developed for noninvasive detection and characterization of cancer in dogs using next-generation sequencing (NGS) of blood-derived DNA; study results are reported here. In total, 1,358 cancer-diagnosed and presumably cancer-free dogs were enrolled in the study, representing the range of breeds, weights, ages, and cancer types seen in routine clinical practice; 1,100 subjects met inclusion criteria for analysis and were used in the validation of the test. Overall, the liquid biopsy test demonstrated a 54.7% (95% CI: 49.3–60.0%) sensitivity and a 98.5% (95% CI: 97.0–99.3%) specificity. For three of the most aggressive canine cancers (lymphoma, hemangiosarcoma, osteosarcoma), the detection rate was 85.4% (95% CI: 78.4–90.9%); and for eight of the most common canine cancers (lymphoma, hemangiosarcoma, osteosarcoma, soft tissue sarcoma, mast cell tumor, mammary gland carcinoma, anal sac adenocarcinoma, malignant melanoma), the detection rate was 61.9% (95% CI: 55.3–68.1%). The test detected cancer signal in patients representing 30 distinct cancer types and provided a Cancer Signal Origin prediction for a subset of patients with hematological malignancies. Furthermore, the test accurately detected cancer signal in four presumably cancer-free subjects before the onset of clinical signs, further supporting the utility of liquid biopsy as an early detection test. Taken together, these findings demonstrate that NGS-based liquid biopsy can offer a novel option for noninvasive multi-cancer detection in dogs. Public Library of Science 2022-04-26 /pmc/articles/PMC9041869/ /pubmed/35471999 http://dx.doi.org/10.1371/journal.pone.0266623 Text en © 2022 Flory et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Flory, Andi
Kruglyak, Kristina M.
Tynan, John A.
McLennan, Lisa M.
Rafalko, Jill M.
Fiaux, Patrick Christian
Hernandez, Gilberto E.
Marass, Francesco
Nakashe, Prachi
Ruiz-Perez, Carlos A.
Fath, Donna M.
Jennings, Thuy
Motalli-Pepio, Rita
Wotrang, Kate
McCleary-Wheeler, Angela L.
Lana, Susan
Phillips, Brenda
Flesner, Brian K.
Leibman, Nicole F.
LaDue, Tracy
Tripp, Chelsea D.
Coomber, Brenda L.
Woods, J. Paul
Miller, Mairin
Aiken, Sean W.
Wolf-Ringwall, Amber
Borgatti, Antonella
Kraska, Kathleen
Thomson, Christopher B.
Kosanovich Cahalane, Alane
Murray, Rebecca L.
Kisseberth, William C.
Camps-Palau, Maria A.
Floch, Franck
Beaudu-Lange, Claire
Klajer-Peres, Aurélia
Keravel, Olivier
Fribourg-Blanc, Luc-André
Mazetier, Pascale Chicha
Marco, Angelo
McLeod, Molly B.
Portillo, Erin
Clark, Terry S.
Judd, Scott
Feinberg, C. Kirk
Benitez, Marie
Runyan, Candace
Hackett, Lindsey
Lafey, Scott
Richardson, Danielle
Vineyard, Sarah
Tefend Campbell, Mary
Dharajiya, Nilesh
Jensen, Taylor J.
van den Boom, Dirk
Diaz, Luis A.
Grosu, Daniel S.
Polk, Arthur
Marsal, Kalle
Hicks, Susan Cho
Lytle, Katherine M.
Holtvoigt, Lauren
Chibuk, Jason
Chorny, Ilya
Tsui, Dana W. Y.
Clinical validation of a next-generation sequencing-based multi-cancer early detection “liquid biopsy” blood test in over 1,000 dogs using an independent testing set: The CANcer Detection in Dogs (CANDiD) study
title Clinical validation of a next-generation sequencing-based multi-cancer early detection “liquid biopsy” blood test in over 1,000 dogs using an independent testing set: The CANcer Detection in Dogs (CANDiD) study
title_full Clinical validation of a next-generation sequencing-based multi-cancer early detection “liquid biopsy” blood test in over 1,000 dogs using an independent testing set: The CANcer Detection in Dogs (CANDiD) study
title_fullStr Clinical validation of a next-generation sequencing-based multi-cancer early detection “liquid biopsy” blood test in over 1,000 dogs using an independent testing set: The CANcer Detection in Dogs (CANDiD) study
title_full_unstemmed Clinical validation of a next-generation sequencing-based multi-cancer early detection “liquid biopsy” blood test in over 1,000 dogs using an independent testing set: The CANcer Detection in Dogs (CANDiD) study
title_short Clinical validation of a next-generation sequencing-based multi-cancer early detection “liquid biopsy” blood test in over 1,000 dogs using an independent testing set: The CANcer Detection in Dogs (CANDiD) study
title_sort clinical validation of a next-generation sequencing-based multi-cancer early detection “liquid biopsy” blood test in over 1,000 dogs using an independent testing set: the cancer detection in dogs (candid) study
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9041869/
https://www.ncbi.nlm.nih.gov/pubmed/35471999
http://dx.doi.org/10.1371/journal.pone.0266623
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