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The Digital Brain Bank, an open access platform for post-mortem imaging datasets

Post-mortem magnetic resonance imaging (MRI) provides the opportunity to acquire high-resolution datasets to investigate neuroanatomy and validate the origins of image contrast through microscopy comparisons. We introduce the Digital Brain Bank (open.win.ox.ac.uk/DigitalBrainBank), a data release pl...

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Autores principales: Tendler, Benjamin C, Hanayik, Taylor, Ansorge, Olaf, Bangerter-Christensen, Sarah, Berns, Gregory S, Bertelsen, Mads F, Bryant, Katherine L, Foxley, Sean, van den Heuvel, Martijn P, Howard, Amy FD, Huszar, Istvan N, Khrapitchev, Alexandre A, Leonte, Anna, Manger, Paul R, Menke, Ricarda AL, Mollink, Jeroen, Mortimer, Duncan, Pallebage-Gamarallage, Menuka, Roumazeilles, Lea, Sallet, Jerome, Scholtens, Lianne H, Scott, Connor, Smart, Adele, Turner, Martin R, Wang, Chaoyue, Jbabdi, Saad, Mars, Rogier B, Miller, Karla L
Formato: Online Artículo Texto
Lenguaje:English
Publicado: eLife Sciences Publications, Ltd 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9042233/
https://www.ncbi.nlm.nih.gov/pubmed/35297760
http://dx.doi.org/10.7554/eLife.73153
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author Tendler, Benjamin C
Hanayik, Taylor
Ansorge, Olaf
Bangerter-Christensen, Sarah
Berns, Gregory S
Bertelsen, Mads F
Bryant, Katherine L
Foxley, Sean
van den Heuvel, Martijn P
Howard, Amy FD
Huszar, Istvan N
Khrapitchev, Alexandre A
Leonte, Anna
Manger, Paul R
Menke, Ricarda AL
Mollink, Jeroen
Mortimer, Duncan
Pallebage-Gamarallage, Menuka
Roumazeilles, Lea
Sallet, Jerome
Scholtens, Lianne H
Scott, Connor
Smart, Adele
Turner, Martin R
Wang, Chaoyue
Jbabdi, Saad
Mars, Rogier B
Miller, Karla L
author_facet Tendler, Benjamin C
Hanayik, Taylor
Ansorge, Olaf
Bangerter-Christensen, Sarah
Berns, Gregory S
Bertelsen, Mads F
Bryant, Katherine L
Foxley, Sean
van den Heuvel, Martijn P
Howard, Amy FD
Huszar, Istvan N
Khrapitchev, Alexandre A
Leonte, Anna
Manger, Paul R
Menke, Ricarda AL
Mollink, Jeroen
Mortimer, Duncan
Pallebage-Gamarallage, Menuka
Roumazeilles, Lea
Sallet, Jerome
Scholtens, Lianne H
Scott, Connor
Smart, Adele
Turner, Martin R
Wang, Chaoyue
Jbabdi, Saad
Mars, Rogier B
Miller, Karla L
author_sort Tendler, Benjamin C
collection PubMed
description Post-mortem magnetic resonance imaging (MRI) provides the opportunity to acquire high-resolution datasets to investigate neuroanatomy and validate the origins of image contrast through microscopy comparisons. We introduce the Digital Brain Bank (open.win.ox.ac.uk/DigitalBrainBank), a data release platform providing open access to curated, multimodal post-mortem neuroimaging datasets. Datasets span three themes—Digital Neuroanatomist: datasets for detailed neuroanatomical investigations; Digital Brain Zoo: datasets for comparative neuroanatomy; and Digital Pathologist: datasets for neuropathology investigations. The first Digital Brain Bank data release includes 21 distinctive whole-brain diffusion MRI datasets for structural connectivity investigations, alongside microscopy and complementary MRI modalities. This includes one of the highest-resolution whole-brain human diffusion MRI datasets ever acquired, whole-brain diffusion MRI in fourteen nonhuman primate species, and one of the largest post-mortem whole-brain cohort imaging studies in neurodegeneration. The Digital Brain Bank is the culmination of our lab’s investment into post-mortem MRI methodology and MRI-microscopy analysis techniques. This manuscript provides a detailed overview of our work with post-mortem imaging to date, including the development of diffusion MRI methods to image large post-mortem samples, including whole, human brains. Taken together, the Digital Brain Bank provides cross-scale, cross-species datasets facilitating the incorporation of post-mortem data into neuroimaging studies.
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spelling pubmed-90422332022-04-27 The Digital Brain Bank, an open access platform for post-mortem imaging datasets Tendler, Benjamin C Hanayik, Taylor Ansorge, Olaf Bangerter-Christensen, Sarah Berns, Gregory S Bertelsen, Mads F Bryant, Katherine L Foxley, Sean van den Heuvel, Martijn P Howard, Amy FD Huszar, Istvan N Khrapitchev, Alexandre A Leonte, Anna Manger, Paul R Menke, Ricarda AL Mollink, Jeroen Mortimer, Duncan Pallebage-Gamarallage, Menuka Roumazeilles, Lea Sallet, Jerome Scholtens, Lianne H Scott, Connor Smart, Adele Turner, Martin R Wang, Chaoyue Jbabdi, Saad Mars, Rogier B Miller, Karla L eLife Neuroscience Post-mortem magnetic resonance imaging (MRI) provides the opportunity to acquire high-resolution datasets to investigate neuroanatomy and validate the origins of image contrast through microscopy comparisons. We introduce the Digital Brain Bank (open.win.ox.ac.uk/DigitalBrainBank), a data release platform providing open access to curated, multimodal post-mortem neuroimaging datasets. Datasets span three themes—Digital Neuroanatomist: datasets for detailed neuroanatomical investigations; Digital Brain Zoo: datasets for comparative neuroanatomy; and Digital Pathologist: datasets for neuropathology investigations. The first Digital Brain Bank data release includes 21 distinctive whole-brain diffusion MRI datasets for structural connectivity investigations, alongside microscopy and complementary MRI modalities. This includes one of the highest-resolution whole-brain human diffusion MRI datasets ever acquired, whole-brain diffusion MRI in fourteen nonhuman primate species, and one of the largest post-mortem whole-brain cohort imaging studies in neurodegeneration. The Digital Brain Bank is the culmination of our lab’s investment into post-mortem MRI methodology and MRI-microscopy analysis techniques. This manuscript provides a detailed overview of our work with post-mortem imaging to date, including the development of diffusion MRI methods to image large post-mortem samples, including whole, human brains. Taken together, the Digital Brain Bank provides cross-scale, cross-species datasets facilitating the incorporation of post-mortem data into neuroimaging studies. eLife Sciences Publications, Ltd 2022-03-17 /pmc/articles/PMC9042233/ /pubmed/35297760 http://dx.doi.org/10.7554/eLife.73153 Text en © 2022, Tendler et al https://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited.
spellingShingle Neuroscience
Tendler, Benjamin C
Hanayik, Taylor
Ansorge, Olaf
Bangerter-Christensen, Sarah
Berns, Gregory S
Bertelsen, Mads F
Bryant, Katherine L
Foxley, Sean
van den Heuvel, Martijn P
Howard, Amy FD
Huszar, Istvan N
Khrapitchev, Alexandre A
Leonte, Anna
Manger, Paul R
Menke, Ricarda AL
Mollink, Jeroen
Mortimer, Duncan
Pallebage-Gamarallage, Menuka
Roumazeilles, Lea
Sallet, Jerome
Scholtens, Lianne H
Scott, Connor
Smart, Adele
Turner, Martin R
Wang, Chaoyue
Jbabdi, Saad
Mars, Rogier B
Miller, Karla L
The Digital Brain Bank, an open access platform for post-mortem imaging datasets
title The Digital Brain Bank, an open access platform for post-mortem imaging datasets
title_full The Digital Brain Bank, an open access platform for post-mortem imaging datasets
title_fullStr The Digital Brain Bank, an open access platform for post-mortem imaging datasets
title_full_unstemmed The Digital Brain Bank, an open access platform for post-mortem imaging datasets
title_short The Digital Brain Bank, an open access platform for post-mortem imaging datasets
title_sort digital brain bank, an open access platform for post-mortem imaging datasets
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9042233/
https://www.ncbi.nlm.nih.gov/pubmed/35297760
http://dx.doi.org/10.7554/eLife.73153
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