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DBFU-Net: Double branch fusion U-Net with hard example weighting train strategy to segment retinal vessel

BACKGROUND: Many fundus imaging modalities measure ocular changes. Automatic retinal vessel segmentation (RVS) is a significant fundus image-based method for the diagnosis of ophthalmologic diseases. However, precise vessel segmentation is a challenging task when detecting micro-changes in fundus im...

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Autores principales: Huang, Jianping, Lin, Zefang, Chen, Yingyin, Zhang, Xiao, Zhao, Wei, Zhang, Jie, Li, Yong, He, Xu, Zhan, Meixiao, Lu, Ligong, Jiang, Xiaofei, Peng, Yongjun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9044242/
https://www.ncbi.nlm.nih.gov/pubmed/35494791
http://dx.doi.org/10.7717/peerj-cs.871
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author Huang, Jianping
Lin, Zefang
Chen, Yingyin
Zhang, Xiao
Zhao, Wei
Zhang, Jie
Li, Yong
He, Xu
Zhan, Meixiao
Lu, Ligong
Jiang, Xiaofei
Peng, Yongjun
author_facet Huang, Jianping
Lin, Zefang
Chen, Yingyin
Zhang, Xiao
Zhao, Wei
Zhang, Jie
Li, Yong
He, Xu
Zhan, Meixiao
Lu, Ligong
Jiang, Xiaofei
Peng, Yongjun
author_sort Huang, Jianping
collection PubMed
description BACKGROUND: Many fundus imaging modalities measure ocular changes. Automatic retinal vessel segmentation (RVS) is a significant fundus image-based method for the diagnosis of ophthalmologic diseases. However, precise vessel segmentation is a challenging task when detecting micro-changes in fundus images, e.g., tiny vessels, vessel edges, vessel lesions and optic disc edges. METHODS: In this paper, we will introduce a novel double branch fusion U-Net model that allows one of the branches to be trained by a weighting scheme that emphasizes harder examples to improve the overall segmentation performance. A new mask, we call a hard example mask, is needed for those examples that include a weighting strategy that is different from other methods. The method we propose extracts the hard example mask by morphology, meaning that the hard example mask does not need any rough segmentation model. To alleviate overfitting, we propose a random channel attention mechanism that is better than the drop-out method or the L2-regularization method in RVS. RESULTS: We have verified the proposed approach on the DRIVE, STARE and CHASE datasets to quantify the performance metrics. Compared to other existing approaches, using those dataset platforms, the proposed approach has competitive performance metrics. (DRIVE: F1-Score = 0.8289, G-Mean = 0.8995, AUC = 0.9811; STARE: F1-Score = 0.8501, G-Mean = 0.9198, AUC = 0.9892; CHASE: F1-Score = 0.8375, G-Mean = 0.9138, AUC = 0.9879). DISCUSSION: The segmentation results showed that DBFU-Net with RCA achieves competitive performance in three RVS datasets. Additionally, the proposed morphological-based extraction method for hard examples can reduce the computational cost. Finally, the random channel attention mechanism proposed in this paper has proven to be more effective than other regularization methods in the RVS task.
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spelling pubmed-90442422022-04-28 DBFU-Net: Double branch fusion U-Net with hard example weighting train strategy to segment retinal vessel Huang, Jianping Lin, Zefang Chen, Yingyin Zhang, Xiao Zhao, Wei Zhang, Jie Li, Yong He, Xu Zhan, Meixiao Lu, Ligong Jiang, Xiaofei Peng, Yongjun PeerJ Comput Sci Bioinformatics BACKGROUND: Many fundus imaging modalities measure ocular changes. Automatic retinal vessel segmentation (RVS) is a significant fundus image-based method for the diagnosis of ophthalmologic diseases. However, precise vessel segmentation is a challenging task when detecting micro-changes in fundus images, e.g., tiny vessels, vessel edges, vessel lesions and optic disc edges. METHODS: In this paper, we will introduce a novel double branch fusion U-Net model that allows one of the branches to be trained by a weighting scheme that emphasizes harder examples to improve the overall segmentation performance. A new mask, we call a hard example mask, is needed for those examples that include a weighting strategy that is different from other methods. The method we propose extracts the hard example mask by morphology, meaning that the hard example mask does not need any rough segmentation model. To alleviate overfitting, we propose a random channel attention mechanism that is better than the drop-out method or the L2-regularization method in RVS. RESULTS: We have verified the proposed approach on the DRIVE, STARE and CHASE datasets to quantify the performance metrics. Compared to other existing approaches, using those dataset platforms, the proposed approach has competitive performance metrics. (DRIVE: F1-Score = 0.8289, G-Mean = 0.8995, AUC = 0.9811; STARE: F1-Score = 0.8501, G-Mean = 0.9198, AUC = 0.9892; CHASE: F1-Score = 0.8375, G-Mean = 0.9138, AUC = 0.9879). DISCUSSION: The segmentation results showed that DBFU-Net with RCA achieves competitive performance in three RVS datasets. Additionally, the proposed morphological-based extraction method for hard examples can reduce the computational cost. Finally, the random channel attention mechanism proposed in this paper has proven to be more effective than other regularization methods in the RVS task. PeerJ Inc. 2022-02-18 /pmc/articles/PMC9044242/ /pubmed/35494791 http://dx.doi.org/10.7717/peerj-cs.871 Text en ©2022 Huang et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Huang, Jianping
Lin, Zefang
Chen, Yingyin
Zhang, Xiao
Zhao, Wei
Zhang, Jie
Li, Yong
He, Xu
Zhan, Meixiao
Lu, Ligong
Jiang, Xiaofei
Peng, Yongjun
DBFU-Net: Double branch fusion U-Net with hard example weighting train strategy to segment retinal vessel
title DBFU-Net: Double branch fusion U-Net with hard example weighting train strategy to segment retinal vessel
title_full DBFU-Net: Double branch fusion U-Net with hard example weighting train strategy to segment retinal vessel
title_fullStr DBFU-Net: Double branch fusion U-Net with hard example weighting train strategy to segment retinal vessel
title_full_unstemmed DBFU-Net: Double branch fusion U-Net with hard example weighting train strategy to segment retinal vessel
title_short DBFU-Net: Double branch fusion U-Net with hard example weighting train strategy to segment retinal vessel
title_sort dbfu-net: double branch fusion u-net with hard example weighting train strategy to segment retinal vessel
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9044242/
https://www.ncbi.nlm.nih.gov/pubmed/35494791
http://dx.doi.org/10.7717/peerj-cs.871
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