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DBFU-Net: Double branch fusion U-Net with hard example weighting train strategy to segment retinal vessel
BACKGROUND: Many fundus imaging modalities measure ocular changes. Automatic retinal vessel segmentation (RVS) is a significant fundus image-based method for the diagnosis of ophthalmologic diseases. However, precise vessel segmentation is a challenging task when detecting micro-changes in fundus im...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9044242/ https://www.ncbi.nlm.nih.gov/pubmed/35494791 http://dx.doi.org/10.7717/peerj-cs.871 |
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author | Huang, Jianping Lin, Zefang Chen, Yingyin Zhang, Xiao Zhao, Wei Zhang, Jie Li, Yong He, Xu Zhan, Meixiao Lu, Ligong Jiang, Xiaofei Peng, Yongjun |
author_facet | Huang, Jianping Lin, Zefang Chen, Yingyin Zhang, Xiao Zhao, Wei Zhang, Jie Li, Yong He, Xu Zhan, Meixiao Lu, Ligong Jiang, Xiaofei Peng, Yongjun |
author_sort | Huang, Jianping |
collection | PubMed |
description | BACKGROUND: Many fundus imaging modalities measure ocular changes. Automatic retinal vessel segmentation (RVS) is a significant fundus image-based method for the diagnosis of ophthalmologic diseases. However, precise vessel segmentation is a challenging task when detecting micro-changes in fundus images, e.g., tiny vessels, vessel edges, vessel lesions and optic disc edges. METHODS: In this paper, we will introduce a novel double branch fusion U-Net model that allows one of the branches to be trained by a weighting scheme that emphasizes harder examples to improve the overall segmentation performance. A new mask, we call a hard example mask, is needed for those examples that include a weighting strategy that is different from other methods. The method we propose extracts the hard example mask by morphology, meaning that the hard example mask does not need any rough segmentation model. To alleviate overfitting, we propose a random channel attention mechanism that is better than the drop-out method or the L2-regularization method in RVS. RESULTS: We have verified the proposed approach on the DRIVE, STARE and CHASE datasets to quantify the performance metrics. Compared to other existing approaches, using those dataset platforms, the proposed approach has competitive performance metrics. (DRIVE: F1-Score = 0.8289, G-Mean = 0.8995, AUC = 0.9811; STARE: F1-Score = 0.8501, G-Mean = 0.9198, AUC = 0.9892; CHASE: F1-Score = 0.8375, G-Mean = 0.9138, AUC = 0.9879). DISCUSSION: The segmentation results showed that DBFU-Net with RCA achieves competitive performance in three RVS datasets. Additionally, the proposed morphological-based extraction method for hard examples can reduce the computational cost. Finally, the random channel attention mechanism proposed in this paper has proven to be more effective than other regularization methods in the RVS task. |
format | Online Article Text |
id | pubmed-9044242 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-90442422022-04-28 DBFU-Net: Double branch fusion U-Net with hard example weighting train strategy to segment retinal vessel Huang, Jianping Lin, Zefang Chen, Yingyin Zhang, Xiao Zhao, Wei Zhang, Jie Li, Yong He, Xu Zhan, Meixiao Lu, Ligong Jiang, Xiaofei Peng, Yongjun PeerJ Comput Sci Bioinformatics BACKGROUND: Many fundus imaging modalities measure ocular changes. Automatic retinal vessel segmentation (RVS) is a significant fundus image-based method for the diagnosis of ophthalmologic diseases. However, precise vessel segmentation is a challenging task when detecting micro-changes in fundus images, e.g., tiny vessels, vessel edges, vessel lesions and optic disc edges. METHODS: In this paper, we will introduce a novel double branch fusion U-Net model that allows one of the branches to be trained by a weighting scheme that emphasizes harder examples to improve the overall segmentation performance. A new mask, we call a hard example mask, is needed for those examples that include a weighting strategy that is different from other methods. The method we propose extracts the hard example mask by morphology, meaning that the hard example mask does not need any rough segmentation model. To alleviate overfitting, we propose a random channel attention mechanism that is better than the drop-out method or the L2-regularization method in RVS. RESULTS: We have verified the proposed approach on the DRIVE, STARE and CHASE datasets to quantify the performance metrics. Compared to other existing approaches, using those dataset platforms, the proposed approach has competitive performance metrics. (DRIVE: F1-Score = 0.8289, G-Mean = 0.8995, AUC = 0.9811; STARE: F1-Score = 0.8501, G-Mean = 0.9198, AUC = 0.9892; CHASE: F1-Score = 0.8375, G-Mean = 0.9138, AUC = 0.9879). DISCUSSION: The segmentation results showed that DBFU-Net with RCA achieves competitive performance in three RVS datasets. Additionally, the proposed morphological-based extraction method for hard examples can reduce the computational cost. Finally, the random channel attention mechanism proposed in this paper has proven to be more effective than other regularization methods in the RVS task. PeerJ Inc. 2022-02-18 /pmc/articles/PMC9044242/ /pubmed/35494791 http://dx.doi.org/10.7717/peerj-cs.871 Text en ©2022 Huang et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited. |
spellingShingle | Bioinformatics Huang, Jianping Lin, Zefang Chen, Yingyin Zhang, Xiao Zhao, Wei Zhang, Jie Li, Yong He, Xu Zhan, Meixiao Lu, Ligong Jiang, Xiaofei Peng, Yongjun DBFU-Net: Double branch fusion U-Net with hard example weighting train strategy to segment retinal vessel |
title | DBFU-Net: Double branch fusion U-Net with hard example weighting train strategy to segment retinal vessel |
title_full | DBFU-Net: Double branch fusion U-Net with hard example weighting train strategy to segment retinal vessel |
title_fullStr | DBFU-Net: Double branch fusion U-Net with hard example weighting train strategy to segment retinal vessel |
title_full_unstemmed | DBFU-Net: Double branch fusion U-Net with hard example weighting train strategy to segment retinal vessel |
title_short | DBFU-Net: Double branch fusion U-Net with hard example weighting train strategy to segment retinal vessel |
title_sort | dbfu-net: double branch fusion u-net with hard example weighting train strategy to segment retinal vessel |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9044242/ https://www.ncbi.nlm.nih.gov/pubmed/35494791 http://dx.doi.org/10.7717/peerj-cs.871 |
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