Cargando…

Amplicon Sequencing of Single-Copy Protein-Coding Genes Reveals Accurate Diversity for Sequence-Discrete Microbiome Populations

An in-depth understanding of microbial function and the division of ecological niches requires accurate delineation and identification of microbes at a fine taxonomic resolution. Microbial phylotypes are typically defined using a 97% small subunit (16S) rRNA threshold. However, increasing evidence h...

Descripción completa

Detalles Bibliográficos
Autores principales:	Yang, Chengfeng, Su, Qinzhi, Tang, Min, Luo, Shiqi, Zheng, Hao, Zhang, Xue, Zhou, Xin
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	American Society for Microbiology 2022
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9045262/ https://www.ncbi.nlm.nih.gov/pubmed/35416715 http://dx.doi.org/10.1128/spectrum.02105-21

Ejemplares similares

Metatranscriptomics and Amplicon Sequencing Reveal Mutualisms in Seagrass Microbiomes
por: Crump, Byron C., et al.
Publicado: (2018)

Amplicon sequencing provides more accurate microbiome information in healthy children compared to culturing
por: Gupta, Shashank, et al.
Publicado: (2019)

High-resolution ISR amplicon sequencing reveals personalized oral microbiome
por: Mukherjee, Chiranjit, et al.
Publicado: (2018)

Accurate multiplexing and filtering for high-throughput amplicon-sequencing
por: Esling, Philippe, et al.
Publicado: (2015)

Microbiome Shift, Diversity, and Overabundance of Opportunistic Pathogens in Bovine Digital Dermatitis Revealed by 16S rRNA Amplicon Sequencing
por: Espiritu, Hector M., et al.
Publicado: (2020)

Correction to: High-resolution ISR amplicon sequencing reveals personalized oral microbiome
por: Mukherjee, Chiranjit, et al.
Publicado: (2018)

Ultra-accurate microbial amplicon sequencing with synthetic long reads
por: Callahan, Benjamin J., et al.
Publicado: (2021)

Pathways for Understanding Blue Carbon Microbiomes with Amplicon Sequencing
por: Hurtado-McCormick, Valentina, et al.
Publicado: (2022)

Rapid and Accurate Detection of SARS Coronavirus 2 by Nanopore Amplicon Sequencing
por: Li, Xiao-xiao, et al.
Publicado: (2022)

LotuS2: an ultrafast and highly accurate tool for amplicon sequencing analysis
por: Özkurt, Ezgi, et al.
Publicado: (2022)

Rapid and accurate taxonomic classification of cpn60 amplicon sequence variants
por: Ren, Qingyi, et al.
Publicado: (2023)

Accurate Estimation of Fungal Diversity and Abundance through Improved Lineage-Specific Primers Optimized for Illumina Amplicon Sequencing
por: Taylor, D. Lee, et al.
Publicado: (2016)

An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar
por: Grubaugh, Nathan D., et al.
Publicado: (2019)

Revealing the composition of the eukaryotic microbiome of oyster spat by CRISPR-Cas Selective Amplicon Sequencing (CCSAS)
por: Zhong, Kevin Xu, et al.
Publicado: (2021)

The Grapevine and Wine Microbiome: Insights from High-Throughput Amplicon Sequencing
por: Morgan, Horatio H., et al.
Publicado: (2017)

Accurate estimation of molecular counts from amplicon sequence data with unique molecular identifiers
por: Peng, Xiyu, et al.
Publicado: (2023)

Multi-factor data normalization enables the detection of copy number aberrations in amplicon sequencing data
por: Boeva, Valentina, et al.
Publicado: (2014)

Unprecedented Diversity of Lactococcal Group 936 Bacteriophages Revealed by Amplicon Sequencing of the Portal Protein Gene
por: Frantzen, Cyril Alexander, et al.
Publicado: (2019)

MinION Sequencing of colorectal cancer tumour microbiomes—A comparison with amplicon-based and RNA-Sequencing
por: Taylor, William S., et al.
Publicado: (2020)

Dissecting Disease-Suppressive Rhizosphere Microbiomes by Functional Amplicon Sequencing and 10× Metagenomics
por: Tracanna, Vittorio, et al.
Publicado: (2021)

Oncogene Concatenated Enriched Amplicon Nanopore Sequencing for rapid, accurate, and affordable somatic mutation detection
por: Thirunavukarasu, Deepak, et al.
Publicado: (2021)

Amplicon sequencing based profiling of bacterial diversity from Krossfjorden, Arctic
por: Kachiprath, Bhavya, et al.
Publicado: (2018)

SESAME (SEquence Sorter & AMplicon Explorer): genotyping based on high-throughput multiplex amplicon sequencing
por: Meglécz, Emese, et al.
Publicado: (2011)

COMPASS: joint copy number and mutation phylogeny reconstruction from amplicon single-cell sequencing data
por: Sollier, Etienne, et al.
Publicado: (2023)

Culture-Dependent and Amplicon Sequencing Approaches Reveal Diversity and Distribution of Black Fungi in Antarctic Cryptoendolithic Communities
por: Selbmann, Laura, et al.
Publicado: (2021)

Understanding the phyllosphere microbiome assemblage in grape species (Vitaceae) with amplicon sequence data structures
por: Singh, Prashant, et al.
Publicado: (2019)

Comprehensive Assessment of 16S rRNA Gene Amplicon Sequencing for Microbiome Profiling across Multiple Habitats
por: Zhang, Wenke, et al.
Publicado: (2023)

SiNG-PCRseq: Accurate inter-sequence quantification achieved by spiking-in a neighbor genome for competitive PCR amplicon sequencing
por: Oh, Soo A., et al.
Publicado: (2015)

Accurate annotation of protein coding sequences with IDTAXA
por: Cooley, Nicholas P, et al.
Publicado: (2021)

Identifying accurate metagenome and amplicon software via a meta-analysis of sequence to taxonomy benchmarking studies
por: Gardner, Paul P., et al.
Publicado: (2019)

Recommendations for accurate genotyping of SARS-CoV-2 using amplicon-based sequencing of clinical samples
por: Kubik, Slawomir, et al.
Publicado: (2021)

Identification of copy number alterations in colon cancer from analysis of amplicon-based next generation sequencing data
por: Oliveira, Duarte Mendes, et al.
Publicado: (2018)

Ioncopy: a novel method for calling copy number alterations in amplicon sequencing data including significance assessment
por: Budczies, Jan, et al.
Publicado: (2016)

Low bacterial community diversity in two introduced aphid pests revealed with 16S rRNA amplicon sequencing
por: Zepeda-Paulo, Francisca, et al.
Publicado: (2018)

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
por: Bokulich, Nicholas A., et al.
Publicado: (2012)

Generic Amplicon Deep Sequencing to Determine Ilarvirus Species Diversity in Australian Prunus
por: Kinoti, Wycliff M., et al.
Publicado: (2017)

Metagenomic data on bacterial diversity profiling of Arabian sea sediment by amplicon sequencing
por: Nair, Harisree P., et al.
Publicado: (2019)

Analysis of the mouse gut microbiome using full-length 16S rRNA amplicon sequencing
por: Shin, Jongoh, et al.
Publicado: (2016)

Comparison of the Microbiome of Artisanal Homemade and Industrial Feta Cheese through Amplicon Sequencing and Shotgun Metagenomics
por: Papadimitriou, Konstantinos, et al.
Publicado: (2022)

Amplicon-Based Microbiome Profiling: From Second- to Third-Generation Sequencing for Higher Taxonomic Resolution
por: Notario, Elisabetta, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_5jb5k53iisvcvo2udv4rgul2p9