Cargando…
The complete chloroplast genome of Euonymus alatus (Celastraceae)
Euonymus alatus, Celastraceae, is a deciduous tree species valued for its ornamental and medicinal properties. Here, the species’ whole chloroplast genome sequence was generated by assembling the Illumina paired-end sequencing reads. The circular genome was 157,611 bp in length, exhibiting a typical...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9045756/ https://www.ncbi.nlm.nih.gov/pubmed/35493714 http://dx.doi.org/10.1080/23802359.2022.2067494 |
_version_ | 1784695383468802048 |
---|---|
author | Ning, Kun Zhou, Ting Wang, Yaolong El-Kassaby, Yousry A. Ma, Yan |
author_facet | Ning, Kun Zhou, Ting Wang, Yaolong El-Kassaby, Yousry A. Ma, Yan |
author_sort | Ning, Kun |
collection | PubMed |
description | Euonymus alatus, Celastraceae, is a deciduous tree species valued for its ornamental and medicinal properties. Here, the species’ whole chloroplast genome sequence was generated by assembling the Illumina paired-end sequencing reads. The circular genome was 157,611 bp in length, exhibiting a typical quadripartite structure with a large single-copy (LSC: 85,892 bp), a small single-copy (SSC: 18,419 bp), and a pair of inverted repeat regions (IRA and IRB: each of 26,650 bp). The chloroplast genome encoded 131 genes, including 87 protein-coding (78 protein-coding gene species), 36 transfer RNA (29 tRNA species), and 8 ribosomal RNA genes (4 rRNA species). The overall GC content was 37.3%, while the corresponding values of the LSC, SSC and IR regions were 35.1, 31.7 and 42.7%, respectively. Phylogenetic analysis of 12 species complete chloroplast genomes suggested that E. alatus was relatively close to E. japonicus. This complete chloroplast genome is expected to provide valuable insight into further phylogenetic reconstruction of the Celastraceae species. |
format | Online Article Text |
id | pubmed-9045756 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-90457562022-04-28 The complete chloroplast genome of Euonymus alatus (Celastraceae) Ning, Kun Zhou, Ting Wang, Yaolong El-Kassaby, Yousry A. Ma, Yan Mitochondrial DNA B Resour Mitogenome Announcement Euonymus alatus, Celastraceae, is a deciduous tree species valued for its ornamental and medicinal properties. Here, the species’ whole chloroplast genome sequence was generated by assembling the Illumina paired-end sequencing reads. The circular genome was 157,611 bp in length, exhibiting a typical quadripartite structure with a large single-copy (LSC: 85,892 bp), a small single-copy (SSC: 18,419 bp), and a pair of inverted repeat regions (IRA and IRB: each of 26,650 bp). The chloroplast genome encoded 131 genes, including 87 protein-coding (78 protein-coding gene species), 36 transfer RNA (29 tRNA species), and 8 ribosomal RNA genes (4 rRNA species). The overall GC content was 37.3%, while the corresponding values of the LSC, SSC and IR regions were 35.1, 31.7 and 42.7%, respectively. Phylogenetic analysis of 12 species complete chloroplast genomes suggested that E. alatus was relatively close to E. japonicus. This complete chloroplast genome is expected to provide valuable insight into further phylogenetic reconstruction of the Celastraceae species. Taylor & Francis 2022-04-25 /pmc/articles/PMC9045756/ /pubmed/35493714 http://dx.doi.org/10.1080/23802359.2022.2067494 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Ning, Kun Zhou, Ting Wang, Yaolong El-Kassaby, Yousry A. Ma, Yan The complete chloroplast genome of Euonymus alatus (Celastraceae) |
title | The complete chloroplast genome of Euonymus alatus (Celastraceae) |
title_full | The complete chloroplast genome of Euonymus alatus (Celastraceae) |
title_fullStr | The complete chloroplast genome of Euonymus alatus (Celastraceae) |
title_full_unstemmed | The complete chloroplast genome of Euonymus alatus (Celastraceae) |
title_short | The complete chloroplast genome of Euonymus alatus (Celastraceae) |
title_sort | complete chloroplast genome of euonymus alatus (celastraceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9045756/ https://www.ncbi.nlm.nih.gov/pubmed/35493714 http://dx.doi.org/10.1080/23802359.2022.2067494 |
work_keys_str_mv | AT ningkun thecompletechloroplastgenomeofeuonymusalatuscelastraceae AT zhouting thecompletechloroplastgenomeofeuonymusalatuscelastraceae AT wangyaolong thecompletechloroplastgenomeofeuonymusalatuscelastraceae AT elkassabyyousrya thecompletechloroplastgenomeofeuonymusalatuscelastraceae AT mayan thecompletechloroplastgenomeofeuonymusalatuscelastraceae AT ningkun completechloroplastgenomeofeuonymusalatuscelastraceae AT zhouting completechloroplastgenomeofeuonymusalatuscelastraceae AT wangyaolong completechloroplastgenomeofeuonymusalatuscelastraceae AT elkassabyyousrya completechloroplastgenomeofeuonymusalatuscelastraceae AT mayan completechloroplastgenomeofeuonymusalatuscelastraceae |