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Complete chloroplast genome sequence of Solanum hjertingii, one of the wild potato relatives

Solanum hjertingii is a wild tuber-bearing species classified in the Solanaceae family. The chloroplast genome of S. hjertingii was completed via de novo assembly using Illumina paired-end sequencing data. Total length of the chloroplast genome of S. hjertingii is 155,545 bp consisting of 85,976 bp...

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Autor principal: Park, Tae-Ho
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9045759/
https://www.ncbi.nlm.nih.gov/pubmed/35493716
http://dx.doi.org/10.1080/23802359.2022.2068983
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author Park, Tae-Ho
author_facet Park, Tae-Ho
author_sort Park, Tae-Ho
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description Solanum hjertingii is a wild tuber-bearing species classified in the Solanaceae family. The chloroplast genome of S. hjertingii was completed via de novo assembly using Illumina paired-end sequencing data. Total length of the chloroplast genome of S. hjertingii is 155,545 bp consisting of 85,976 bp in a large single copy, 18,383 bp in a small single copy, and 25,593 bp in a pair of inverted repeat regions. Its structure is circular and typically quadripartite. It contains 158 predicted genes in total, including 105 protein-coding, 45 tRNA, and eight rRNA genes. Maximum likelihood phylogenetic analysis of the sequence along with 33 species in the Solanaceae family revealed that S. hjertingii belongs to a large clade with other Solanum species including S. tuberosum and is most closely grouped in the clade with S. hougasii and S. stoloniferum in the clade.
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spelling pubmed-90457592022-04-28 Complete chloroplast genome sequence of Solanum hjertingii, one of the wild potato relatives Park, Tae-Ho Mitochondrial DNA B Resour Plastome Announcement Solanum hjertingii is a wild tuber-bearing species classified in the Solanaceae family. The chloroplast genome of S. hjertingii was completed via de novo assembly using Illumina paired-end sequencing data. Total length of the chloroplast genome of S. hjertingii is 155,545 bp consisting of 85,976 bp in a large single copy, 18,383 bp in a small single copy, and 25,593 bp in a pair of inverted repeat regions. Its structure is circular and typically quadripartite. It contains 158 predicted genes in total, including 105 protein-coding, 45 tRNA, and eight rRNA genes. Maximum likelihood phylogenetic analysis of the sequence along with 33 species in the Solanaceae family revealed that S. hjertingii belongs to a large clade with other Solanum species including S. tuberosum and is most closely grouped in the clade with S. hougasii and S. stoloniferum in the clade. Taylor & Francis 2022-04-25 /pmc/articles/PMC9045759/ /pubmed/35493716 http://dx.doi.org/10.1080/23802359.2022.2068983 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Plastome Announcement
Park, Tae-Ho
Complete chloroplast genome sequence of Solanum hjertingii, one of the wild potato relatives
title Complete chloroplast genome sequence of Solanum hjertingii, one of the wild potato relatives
title_full Complete chloroplast genome sequence of Solanum hjertingii, one of the wild potato relatives
title_fullStr Complete chloroplast genome sequence of Solanum hjertingii, one of the wild potato relatives
title_full_unstemmed Complete chloroplast genome sequence of Solanum hjertingii, one of the wild potato relatives
title_short Complete chloroplast genome sequence of Solanum hjertingii, one of the wild potato relatives
title_sort complete chloroplast genome sequence of solanum hjertingii, one of the wild potato relatives
topic Plastome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9045759/
https://www.ncbi.nlm.nih.gov/pubmed/35493716
http://dx.doi.org/10.1080/23802359.2022.2068983
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