Goslin 2.0 Implements the Recent Lipid Shorthand Nomenclature for MS-Derived Lipid Structures

[Image: see text] Goslin is the first grammar-based computational library for the recognition/parsing and normalization of lipid names following the hierarchical lipid shorthand nomenclature. The new version Goslin 2.0 implements the latest nomenclature and adds an additional grammar to recognize sy...

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Autores principales: Kopczynski, Dominik, Hoffmann, Nils, Peng, Bing, Liebisch, Gerhard, Spener, Friedrich, Ahrends, Robert
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9047418/
https://www.ncbi.nlm.nih.gov/pubmed/35404045
http://dx.doi.org/10.1021/acs.analchem.1c05430
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author Kopczynski, Dominik
Hoffmann, Nils
Peng, Bing
Liebisch, Gerhard
Spener, Friedrich
Ahrends, Robert
author_facet Kopczynski, Dominik
Hoffmann, Nils
Peng, Bing
Liebisch, Gerhard
Spener, Friedrich
Ahrends, Robert
author_sort Kopczynski, Dominik
collection PubMed
description [Image: see text] Goslin is the first grammar-based computational library for the recognition/parsing and normalization of lipid names following the hierarchical lipid shorthand nomenclature. The new version Goslin 2.0 implements the latest nomenclature and adds an additional grammar to recognize systematic IUPAC-IUB fatty acyl names as stored, e.g., in the LIPID MAPS database and is perfectly suited to update lipid names in LIPID MAPS or HMDB databases to the latest nomenclature. Goslin 2.0 is available as a standalone web application with a REST API as well as C++, C#, Java, Python 3, and R libraries. Importantly, it can be easily included in lipidomics tools and scripts providing direct access to translation functions. All implementations are open source.
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spelling pubmed-90474182022-04-29 Goslin 2.0 Implements the Recent Lipid Shorthand Nomenclature for MS-Derived Lipid Structures Kopczynski, Dominik Hoffmann, Nils Peng, Bing Liebisch, Gerhard Spener, Friedrich Ahrends, Robert Anal Chem [Image: see text] Goslin is the first grammar-based computational library for the recognition/parsing and normalization of lipid names following the hierarchical lipid shorthand nomenclature. The new version Goslin 2.0 implements the latest nomenclature and adds an additional grammar to recognize systematic IUPAC-IUB fatty acyl names as stored, e.g., in the LIPID MAPS database and is perfectly suited to update lipid names in LIPID MAPS or HMDB databases to the latest nomenclature. Goslin 2.0 is available as a standalone web application with a REST API as well as C++, C#, Java, Python 3, and R libraries. Importantly, it can be easily included in lipidomics tools and scripts providing direct access to translation functions. All implementations are open source. American Chemical Society 2022-04-11 2022-04-26 /pmc/articles/PMC9047418/ /pubmed/35404045 http://dx.doi.org/10.1021/acs.analchem.1c05430 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Kopczynski, Dominik
Hoffmann, Nils
Peng, Bing
Liebisch, Gerhard
Spener, Friedrich
Ahrends, Robert
Goslin 2.0 Implements the Recent Lipid Shorthand Nomenclature for MS-Derived Lipid Structures
title Goslin 2.0 Implements the Recent Lipid Shorthand Nomenclature for MS-Derived Lipid Structures
title_full Goslin 2.0 Implements the Recent Lipid Shorthand Nomenclature for MS-Derived Lipid Structures
title_fullStr Goslin 2.0 Implements the Recent Lipid Shorthand Nomenclature for MS-Derived Lipid Structures
title_full_unstemmed Goslin 2.0 Implements the Recent Lipid Shorthand Nomenclature for MS-Derived Lipid Structures
title_short Goslin 2.0 Implements the Recent Lipid Shorthand Nomenclature for MS-Derived Lipid Structures
title_sort goslin 2.0 implements the recent lipid shorthand nomenclature for ms-derived lipid structures
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9047418/
https://www.ncbi.nlm.nih.gov/pubmed/35404045
http://dx.doi.org/10.1021/acs.analchem.1c05430
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