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Supplementary data for genome-wide DNA methylation and gene expression analysis of PBMCs in patients with metabolic syndrome
This supplementary data supports the research article ‘Genome-wide DNA methylation profiling reveals candidate biomarkers and probable molecular mechanism of metabolic syndrome’ (Baek et al., in press). To obtain these data, 32 participants with metabolic syndrome (MetS) were enrolled in the associa...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9048064/ https://www.ncbi.nlm.nih.gov/pubmed/35496480 http://dx.doi.org/10.1016/j.dib.2022.108183 |
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author | Baek, Su-Jin Lee, Siwoo Jin, Hee-Jeong |
author_facet | Baek, Su-Jin Lee, Siwoo Jin, Hee-Jeong |
author_sort | Baek, Su-Jin |
collection | PubMed |
description | This supplementary data supports the research article ‘Genome-wide DNA methylation profiling reveals candidate biomarkers and probable molecular mechanism of metabolic syndrome’ (Baek et al., in press). To obtain these data, 32 participants with metabolic syndrome (MetS) were enrolled in the associated study. We collected peripheral blood mononuclear cells (PBMCs) from 11 patients with MetS and nine controls and compared genome-wide gene expression and DNA methylation signatures. The remaining 12 participants were used for the experimental validation of the candidate groups. We provide the raw, analyzed, and filtered genome-wide DNA methylation data, obtained using the Infinium Human MethylationEPIC BeadChIP array, and whole transcriptome sequencing data (accession number GSE181647). We list the differentially expressed and differentially methylated genes and their biological functions. These data can serve as a basis for screening appropriate epigenetic biomarkers for MetS. |
format | Online Article Text |
id | pubmed-9048064 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-90480642022-04-29 Supplementary data for genome-wide DNA methylation and gene expression analysis of PBMCs in patients with metabolic syndrome Baek, Su-Jin Lee, Siwoo Jin, Hee-Jeong Data Brief Data Article This supplementary data supports the research article ‘Genome-wide DNA methylation profiling reveals candidate biomarkers and probable molecular mechanism of metabolic syndrome’ (Baek et al., in press). To obtain these data, 32 participants with metabolic syndrome (MetS) were enrolled in the associated study. We collected peripheral blood mononuclear cells (PBMCs) from 11 patients with MetS and nine controls and compared genome-wide gene expression and DNA methylation signatures. The remaining 12 participants were used for the experimental validation of the candidate groups. We provide the raw, analyzed, and filtered genome-wide DNA methylation data, obtained using the Infinium Human MethylationEPIC BeadChIP array, and whole transcriptome sequencing data (accession number GSE181647). We list the differentially expressed and differentially methylated genes and their biological functions. These data can serve as a basis for screening appropriate epigenetic biomarkers for MetS. Elsevier 2022-04-13 /pmc/articles/PMC9048064/ /pubmed/35496480 http://dx.doi.org/10.1016/j.dib.2022.108183 Text en © 2022 The Author(s). Published by Elsevier Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data Article Baek, Su-Jin Lee, Siwoo Jin, Hee-Jeong Supplementary data for genome-wide DNA methylation and gene expression analysis of PBMCs in patients with metabolic syndrome |
title | Supplementary data for genome-wide DNA methylation and gene expression analysis of PBMCs in patients with metabolic syndrome |
title_full | Supplementary data for genome-wide DNA methylation and gene expression analysis of PBMCs in patients with metabolic syndrome |
title_fullStr | Supplementary data for genome-wide DNA methylation and gene expression analysis of PBMCs in patients with metabolic syndrome |
title_full_unstemmed | Supplementary data for genome-wide DNA methylation and gene expression analysis of PBMCs in patients with metabolic syndrome |
title_short | Supplementary data for genome-wide DNA methylation and gene expression analysis of PBMCs in patients with metabolic syndrome |
title_sort | supplementary data for genome-wide dna methylation and gene expression analysis of pbmcs in patients with metabolic syndrome |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9048064/ https://www.ncbi.nlm.nih.gov/pubmed/35496480 http://dx.doi.org/10.1016/j.dib.2022.108183 |
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