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Improving needle visibility in LED-based photoacoustic imaging using deep learning with semi-synthetic datasets

Photoacoustic imaging has shown great potential for guiding minimally invasive procedures by accurate identification of critical tissue targets and invasive medical devices (such as metallic needles). The use of light emitting diodes (LEDs) as the excitation light sources accelerates its clinical tr...

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Autores principales: Shi, Mengjie, Zhao, Tianrui, West, Simeon J., Desjardins, Adrien E., Vercauteren, Tom, Xia, Wenfeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9048160/
https://www.ncbi.nlm.nih.gov/pubmed/35495095
http://dx.doi.org/10.1016/j.pacs.2022.100351
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author Shi, Mengjie
Zhao, Tianrui
West, Simeon J.
Desjardins, Adrien E.
Vercauteren, Tom
Xia, Wenfeng
author_facet Shi, Mengjie
Zhao, Tianrui
West, Simeon J.
Desjardins, Adrien E.
Vercauteren, Tom
Xia, Wenfeng
author_sort Shi, Mengjie
collection PubMed
description Photoacoustic imaging has shown great potential for guiding minimally invasive procedures by accurate identification of critical tissue targets and invasive medical devices (such as metallic needles). The use of light emitting diodes (LEDs) as the excitation light sources accelerates its clinical translation owing to its high affordability and portability. However, needle visibility in LED-based photoacoustic imaging is compromised primarily due to its low optical fluence. In this work, we propose a deep learning framework based on U-Net to improve the visibility of clinical metallic needles with a LED-based photoacoustic and ultrasound imaging system. To address the complexity of capturing ground truth for real data and the poor realism of purely simulated data, this framework included the generation of semi-synthetic training datasets combining both simulated data to represent features from the needles and in vivo measurements for tissue background. Evaluation of the trained neural network was performed with needle insertions into blood-vessel-mimicking phantoms, pork joint tissue ex vivo and measurements on human volunteers. This deep learning-based framework substantially improved the needle visibility in photoacoustic imaging in vivo compared to conventional reconstruction by suppressing background noise and image artefacts, achieving 5.8 and 4.5 times improvements in terms of signal-to-noise ratio and the modified Hausdorff distance, respectively. Thus, the proposed framework could be helpful for reducing complications during percutaneous needle insertions by accurate identification of clinical needles in photoacoustic imaging.
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spelling pubmed-90481602022-04-29 Improving needle visibility in LED-based photoacoustic imaging using deep learning with semi-synthetic datasets Shi, Mengjie Zhao, Tianrui West, Simeon J. Desjardins, Adrien E. Vercauteren, Tom Xia, Wenfeng Photoacoustics Research Article Photoacoustic imaging has shown great potential for guiding minimally invasive procedures by accurate identification of critical tissue targets and invasive medical devices (such as metallic needles). The use of light emitting diodes (LEDs) as the excitation light sources accelerates its clinical translation owing to its high affordability and portability. However, needle visibility in LED-based photoacoustic imaging is compromised primarily due to its low optical fluence. In this work, we propose a deep learning framework based on U-Net to improve the visibility of clinical metallic needles with a LED-based photoacoustic and ultrasound imaging system. To address the complexity of capturing ground truth for real data and the poor realism of purely simulated data, this framework included the generation of semi-synthetic training datasets combining both simulated data to represent features from the needles and in vivo measurements for tissue background. Evaluation of the trained neural network was performed with needle insertions into blood-vessel-mimicking phantoms, pork joint tissue ex vivo and measurements on human volunteers. This deep learning-based framework substantially improved the needle visibility in photoacoustic imaging in vivo compared to conventional reconstruction by suppressing background noise and image artefacts, achieving 5.8 and 4.5 times improvements in terms of signal-to-noise ratio and the modified Hausdorff distance, respectively. Thus, the proposed framework could be helpful for reducing complications during percutaneous needle insertions by accurate identification of clinical needles in photoacoustic imaging. Elsevier 2022-04-07 /pmc/articles/PMC9048160/ /pubmed/35495095 http://dx.doi.org/10.1016/j.pacs.2022.100351 Text en © 2022 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Research Article
Shi, Mengjie
Zhao, Tianrui
West, Simeon J.
Desjardins, Adrien E.
Vercauteren, Tom
Xia, Wenfeng
Improving needle visibility in LED-based photoacoustic imaging using deep learning with semi-synthetic datasets
title Improving needle visibility in LED-based photoacoustic imaging using deep learning with semi-synthetic datasets
title_full Improving needle visibility in LED-based photoacoustic imaging using deep learning with semi-synthetic datasets
title_fullStr Improving needle visibility in LED-based photoacoustic imaging using deep learning with semi-synthetic datasets
title_full_unstemmed Improving needle visibility in LED-based photoacoustic imaging using deep learning with semi-synthetic datasets
title_short Improving needle visibility in LED-based photoacoustic imaging using deep learning with semi-synthetic datasets
title_sort improving needle visibility in led-based photoacoustic imaging using deep learning with semi-synthetic datasets
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9048160/
https://www.ncbi.nlm.nih.gov/pubmed/35495095
http://dx.doi.org/10.1016/j.pacs.2022.100351
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