NewWave: a scalable R/Bioconductor package for the dimensionality reduction and batch effect removal of single-cell RNA-seq data

SUMMARY: We present NewWave, a scalable R/Bioconductor package for the dimensionality reduction and batch effect removal of single-cell RNA sequencing data. To achieve scalability, NewWave uses mini-batch optimization and can work with out-of-memory data, enabling users to analyze datasets with mill...

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Detalles Bibliográficos
Autores principales: Agostinis, Federico, Romualdi, Chiara, Sales, Gabriele, Risso, Davide
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9048694/
https://www.ncbi.nlm.nih.gov/pubmed/35266509
http://dx.doi.org/10.1093/bioinformatics/btac149

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