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Iterative training set refinement enables reactive molecular dynamics via machine learned forces
Machine learning approaches have been successfully employed in many fields of computational chemistry and physics. However, atomistic simulations driven by machine-learned forces are still very challenging. Here we show that reactive self-sputtering from a beryllium surface can be simulated using ne...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society of Chemistry
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9049032/ https://www.ncbi.nlm.nih.gov/pubmed/35495270 http://dx.doi.org/10.1039/c9ra09935b |
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author | Chen, Lei Sukuba, Ivan Probst, Michael Kaiser, Alexander |
author_facet | Chen, Lei Sukuba, Ivan Probst, Michael Kaiser, Alexander |
author_sort | Chen, Lei |
collection | PubMed |
description | Machine learning approaches have been successfully employed in many fields of computational chemistry and physics. However, atomistic simulations driven by machine-learned forces are still very challenging. Here we show that reactive self-sputtering from a beryllium surface can be simulated using neural network trained forces with an accuracy that rivals or exceeds other approaches. The key in machine learning from density functional theory calculations is a well-balanced and complete training set of energies and forces. We have implemented a refinement protocol that corrects the low extrapolation capabilities of neural networks by iteratively checking and improving the molecular dynamic simulations. The sputtering yield obtained for incident energies below 100 eV agrees perfectly with results from ab initio molecular dynamics simulations and compares well with earlier calculations based on pair potentials and bond-order potentials. This approach enables simulation times, sizes and statistics similar to what is accessible by conventional force fields and reaching beyond what is possible with direct ab initio molecular dynamics. We observed that a potential fitted to one surface, Be(0001), has to be augmented with training data for another surface, Be(011̄0), in order to be used for both. |
format | Online Article Text |
id | pubmed-9049032 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | The Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-90490322022-04-28 Iterative training set refinement enables reactive molecular dynamics via machine learned forces Chen, Lei Sukuba, Ivan Probst, Michael Kaiser, Alexander RSC Adv Chemistry Machine learning approaches have been successfully employed in many fields of computational chemistry and physics. However, atomistic simulations driven by machine-learned forces are still very challenging. Here we show that reactive self-sputtering from a beryllium surface can be simulated using neural network trained forces with an accuracy that rivals or exceeds other approaches. The key in machine learning from density functional theory calculations is a well-balanced and complete training set of energies and forces. We have implemented a refinement protocol that corrects the low extrapolation capabilities of neural networks by iteratively checking and improving the molecular dynamic simulations. The sputtering yield obtained for incident energies below 100 eV agrees perfectly with results from ab initio molecular dynamics simulations and compares well with earlier calculations based on pair potentials and bond-order potentials. This approach enables simulation times, sizes and statistics similar to what is accessible by conventional force fields and reaching beyond what is possible with direct ab initio molecular dynamics. We observed that a potential fitted to one surface, Be(0001), has to be augmented with training data for another surface, Be(011̄0), in order to be used for both. The Royal Society of Chemistry 2020-01-27 /pmc/articles/PMC9049032/ /pubmed/35495270 http://dx.doi.org/10.1039/c9ra09935b Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by/3.0/ |
spellingShingle | Chemistry Chen, Lei Sukuba, Ivan Probst, Michael Kaiser, Alexander Iterative training set refinement enables reactive molecular dynamics via machine learned forces |
title | Iterative training set refinement enables reactive molecular dynamics via machine learned forces |
title_full | Iterative training set refinement enables reactive molecular dynamics via machine learned forces |
title_fullStr | Iterative training set refinement enables reactive molecular dynamics via machine learned forces |
title_full_unstemmed | Iterative training set refinement enables reactive molecular dynamics via machine learned forces |
title_short | Iterative training set refinement enables reactive molecular dynamics via machine learned forces |
title_sort | iterative training set refinement enables reactive molecular dynamics via machine learned forces |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9049032/ https://www.ncbi.nlm.nih.gov/pubmed/35495270 http://dx.doi.org/10.1039/c9ra09935b |
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