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Male infertility is not liked with HSF1, HSF2 and UBE2I gene polymorphisms among Indian subjects
We analysed the polymorphisms at rs78202224 (C/A) for HSF1 gene, rs139496713 (C/T) and rs45504694 (C/A) for HSF2 gene and rs116868327 (G/A) for UBE2I gene in 547 infertile cases (non-obstructive azoospermia = 464, asthenozoospermia = 83) and 419 proven fertile controls of similar age group and ethni...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Biomedical Informatics
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9049099/ https://www.ncbi.nlm.nih.gov/pubmed/35540693 http://dx.doi.org/10.6026/97320630017715 |
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author | Gangwar, Pravin Kumar Sankhwar, Satya Narayan Pant, Shriya Singh, Bhupendra Pal Mahdi, Abbas Ali Singh, Rajender |
author_facet | Gangwar, Pravin Kumar Sankhwar, Satya Narayan Pant, Shriya Singh, Bhupendra Pal Mahdi, Abbas Ali Singh, Rajender |
author_sort | Gangwar, Pravin Kumar |
collection | PubMed |
description | We analysed the polymorphisms at rs78202224 (C/A) for HSF1 gene, rs139496713 (C/T) and rs45504694 (C/A) for HSF2 gene and rs116868327 (G/A) for UBE2I gene in 547 infertile cases (non-obstructive azoospermia = 464, asthenozoospermia = 83) and 419 proven fertile controls of similar age group and ethnicity. SNP genotyping was done using AgenaMassARRY platform (Agena Bioscience, CA). Common, heterozygous, rare genotypes and allelic frequencies were analysed using dominant, recessive and co-dominant models. Data shows no significant association between HSF1, HSF2 polymorphisms and male infertility. However, under dominant (GG vs GA+AA) and co-dominanat (GG vs GA) model, polymorphism at the rs116868327 (G/A) locus in UBE2I gene was found to be linked with asthenozoospermia in males with a significant odd-ratio of 6.91 (confidence interval at 95% was 1.52-31.46; p=0.017). Moreover, frequency of rare allele was higher (2.4%) compared to controls (0.4%). Thus, this data showed a significant risk of developing asthenozoospermic condition in males (Odds ratio= 6.75; Confidence interval at 95%= 1.50-30.49; P= 0.018]. Hence, more number of genotyping studies along with the functional assay in multiple cohorts is needed to validate potential variants associated with male infertility. |
format | Online Article Text |
id | pubmed-9049099 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Biomedical Informatics |
record_format | MEDLINE/PubMed |
spelling | pubmed-90490992022-05-09 Male infertility is not liked with HSF1, HSF2 and UBE2I gene polymorphisms among Indian subjects Gangwar, Pravin Kumar Sankhwar, Satya Narayan Pant, Shriya Singh, Bhupendra Pal Mahdi, Abbas Ali Singh, Rajender Bioinformation Research Article We analysed the polymorphisms at rs78202224 (C/A) for HSF1 gene, rs139496713 (C/T) and rs45504694 (C/A) for HSF2 gene and rs116868327 (G/A) for UBE2I gene in 547 infertile cases (non-obstructive azoospermia = 464, asthenozoospermia = 83) and 419 proven fertile controls of similar age group and ethnicity. SNP genotyping was done using AgenaMassARRY platform (Agena Bioscience, CA). Common, heterozygous, rare genotypes and allelic frequencies were analysed using dominant, recessive and co-dominant models. Data shows no significant association between HSF1, HSF2 polymorphisms and male infertility. However, under dominant (GG vs GA+AA) and co-dominanat (GG vs GA) model, polymorphism at the rs116868327 (G/A) locus in UBE2I gene was found to be linked with asthenozoospermia in males with a significant odd-ratio of 6.91 (confidence interval at 95% was 1.52-31.46; p=0.017). Moreover, frequency of rare allele was higher (2.4%) compared to controls (0.4%). Thus, this data showed a significant risk of developing asthenozoospermic condition in males (Odds ratio= 6.75; Confidence interval at 95%= 1.50-30.49; P= 0.018]. Hence, more number of genotyping studies along with the functional assay in multiple cohorts is needed to validate potential variants associated with male infertility. Biomedical Informatics 2021-08-31 /pmc/articles/PMC9049099/ /pubmed/35540693 http://dx.doi.org/10.6026/97320630017715 Text en © 2021 Biomedical Informatics https://creativecommons.org/licenses/by/3.0/This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License. |
spellingShingle | Research Article Gangwar, Pravin Kumar Sankhwar, Satya Narayan Pant, Shriya Singh, Bhupendra Pal Mahdi, Abbas Ali Singh, Rajender Male infertility is not liked with HSF1, HSF2 and UBE2I gene polymorphisms among Indian subjects |
title | Male infertility is not liked with HSF1, HSF2 and UBE2I gene polymorphisms among Indian subjects |
title_full | Male infertility is not liked with HSF1, HSF2 and UBE2I gene polymorphisms among Indian subjects |
title_fullStr | Male infertility is not liked with HSF1, HSF2 and UBE2I gene polymorphisms among Indian subjects |
title_full_unstemmed | Male infertility is not liked with HSF1, HSF2 and UBE2I gene polymorphisms among Indian subjects |
title_short | Male infertility is not liked with HSF1, HSF2 and UBE2I gene polymorphisms among Indian subjects |
title_sort | male infertility is not liked with hsf1, hsf2 and ube2i gene polymorphisms among indian subjects |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9049099/ https://www.ncbi.nlm.nih.gov/pubmed/35540693 http://dx.doi.org/10.6026/97320630017715 |
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