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Male infertility is not liked with HSF1, HSF2 and UBE2I gene polymorphisms among Indian subjects

We analysed the polymorphisms at rs78202224 (C/A) for HSF1 gene, rs139496713 (C/T) and rs45504694 (C/A) for HSF2 gene and rs116868327 (G/A) for UBE2I gene in 547 infertile cases (non-obstructive azoospermia = 464, asthenozoospermia = 83) and 419 proven fertile controls of similar age group and ethni...

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Autores principales: Gangwar, Pravin Kumar, Sankhwar, Satya Narayan, Pant, Shriya, Singh, Bhupendra Pal, Mahdi, Abbas Ali, Singh, Rajender
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9049099/
https://www.ncbi.nlm.nih.gov/pubmed/35540693
http://dx.doi.org/10.6026/97320630017715
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author Gangwar, Pravin Kumar
Sankhwar, Satya Narayan
Pant, Shriya
Singh, Bhupendra Pal
Mahdi, Abbas Ali
Singh, Rajender
author_facet Gangwar, Pravin Kumar
Sankhwar, Satya Narayan
Pant, Shriya
Singh, Bhupendra Pal
Mahdi, Abbas Ali
Singh, Rajender
author_sort Gangwar, Pravin Kumar
collection PubMed
description We analysed the polymorphisms at rs78202224 (C/A) for HSF1 gene, rs139496713 (C/T) and rs45504694 (C/A) for HSF2 gene and rs116868327 (G/A) for UBE2I gene in 547 infertile cases (non-obstructive azoospermia = 464, asthenozoospermia = 83) and 419 proven fertile controls of similar age group and ethnicity. SNP genotyping was done using AgenaMassARRY platform (Agena Bioscience, CA). Common, heterozygous, rare genotypes and allelic frequencies were analysed using dominant, recessive and co-dominant models. Data shows no significant association between HSF1, HSF2 polymorphisms and male infertility. However, under dominant (GG vs GA+AA) and co-dominanat (GG vs GA) model, polymorphism at the rs116868327 (G/A) locus in UBE2I gene was found to be linked with asthenozoospermia in males with a significant odd-ratio of 6.91 (confidence interval at 95% was 1.52-31.46; p=0.017). Moreover, frequency of rare allele was higher (2.4%) compared to controls (0.4%). Thus, this data showed a significant risk of developing asthenozoospermic condition in males (Odds ratio= 6.75; Confidence interval at 95%= 1.50-30.49; P= 0.018]. Hence, more number of genotyping studies along with the functional assay in multiple cohorts is needed to validate potential variants associated with male infertility.
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spelling pubmed-90490992022-05-09 Male infertility is not liked with HSF1, HSF2 and UBE2I gene polymorphisms among Indian subjects Gangwar, Pravin Kumar Sankhwar, Satya Narayan Pant, Shriya Singh, Bhupendra Pal Mahdi, Abbas Ali Singh, Rajender Bioinformation Research Article We analysed the polymorphisms at rs78202224 (C/A) for HSF1 gene, rs139496713 (C/T) and rs45504694 (C/A) for HSF2 gene and rs116868327 (G/A) for UBE2I gene in 547 infertile cases (non-obstructive azoospermia = 464, asthenozoospermia = 83) and 419 proven fertile controls of similar age group and ethnicity. SNP genotyping was done using AgenaMassARRY platform (Agena Bioscience, CA). Common, heterozygous, rare genotypes and allelic frequencies were analysed using dominant, recessive and co-dominant models. Data shows no significant association between HSF1, HSF2 polymorphisms and male infertility. However, under dominant (GG vs GA+AA) and co-dominanat (GG vs GA) model, polymorphism at the rs116868327 (G/A) locus in UBE2I gene was found to be linked with asthenozoospermia in males with a significant odd-ratio of 6.91 (confidence interval at 95% was 1.52-31.46; p=0.017). Moreover, frequency of rare allele was higher (2.4%) compared to controls (0.4%). Thus, this data showed a significant risk of developing asthenozoospermic condition in males (Odds ratio= 6.75; Confidence interval at 95%= 1.50-30.49; P= 0.018]. Hence, more number of genotyping studies along with the functional assay in multiple cohorts is needed to validate potential variants associated with male infertility. Biomedical Informatics 2021-08-31 /pmc/articles/PMC9049099/ /pubmed/35540693 http://dx.doi.org/10.6026/97320630017715 Text en © 2021 Biomedical Informatics https://creativecommons.org/licenses/by/3.0/This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License.
spellingShingle Research Article
Gangwar, Pravin Kumar
Sankhwar, Satya Narayan
Pant, Shriya
Singh, Bhupendra Pal
Mahdi, Abbas Ali
Singh, Rajender
Male infertility is not liked with HSF1, HSF2 and UBE2I gene polymorphisms among Indian subjects
title Male infertility is not liked with HSF1, HSF2 and UBE2I gene polymorphisms among Indian subjects
title_full Male infertility is not liked with HSF1, HSF2 and UBE2I gene polymorphisms among Indian subjects
title_fullStr Male infertility is not liked with HSF1, HSF2 and UBE2I gene polymorphisms among Indian subjects
title_full_unstemmed Male infertility is not liked with HSF1, HSF2 and UBE2I gene polymorphisms among Indian subjects
title_short Male infertility is not liked with HSF1, HSF2 and UBE2I gene polymorphisms among Indian subjects
title_sort male infertility is not liked with hsf1, hsf2 and ube2i gene polymorphisms among indian subjects
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9049099/
https://www.ncbi.nlm.nih.gov/pubmed/35540693
http://dx.doi.org/10.6026/97320630017715
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