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Computational simulation of anion binding association mechanisms contributing toward rotation of pyrrole rings in dipyrrolyldiketone BF(2) complexes

Dipyrrolyldiketone BF(2) complexes have a characteristic association mechanism with anions; an anion is tightly captured by the NH bonding of the two rotated pyrrole rings and the CH bonding of the backbone in dipyrrolyldiketone BF(2) complexes. In order to elucidate this anion association mechanism...

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Autores principales: Kobayashi, Osamu, Kato, Tomoki, Mashiko, Takako, Haketa, Yohei, Maeda, Hiromitsu, Tachikawa, Masanori
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society of Chemistry 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9050636/
https://www.ncbi.nlm.nih.gov/pubmed/35496591
http://dx.doi.org/10.1039/c9ra09285d
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author Kobayashi, Osamu
Kato, Tomoki
Mashiko, Takako
Haketa, Yohei
Maeda, Hiromitsu
Tachikawa, Masanori
author_facet Kobayashi, Osamu
Kato, Tomoki
Mashiko, Takako
Haketa, Yohei
Maeda, Hiromitsu
Tachikawa, Masanori
author_sort Kobayashi, Osamu
collection PubMed
description Dipyrrolyldiketone BF(2) complexes have a characteristic association mechanism with anions; an anion is tightly captured by the NH bonding of the two rotated pyrrole rings and the CH bonding of the backbone in dipyrrolyldiketone BF(2) complexes. In order to elucidate this anion association mechanism in dipyrrolyldiketone BF(2) complexes, the relative stability of several conformers of the dipyrrolyldiketone BF(2) complex and anion complexes are initially calculated by quantum mechanical density functional theory (DFT). Second, molecular dynamics (MD) simulations were performed for systems comprising a dipyrrolyldiketone BF(2) complex and Cl(−) with several types of countercations in CH(2)Cl(2). From our DFT calculations, it was observed that isomerization could be classified by whether Cl(−) changes its position relative to the dipyrrolyldiketone BF(2) complex or not. From the MD simulations, we found the size effect of countercations: a large cation is released from dipyrrolyldiketone BF(2) complexes more frequently than smaller cations. Meanwhile, when Na(+) is employed as the cation, the formation of a seven-membered ring-like cluster suppresses both the isomerizations. Furthermore, MD simulations suggest that the presence of an anion is critical to stabilize the two rotated pyrrole rings. Hence, from our MD simulations, we have clearly found that the size of the cation affects the isomerization processes.
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spelling pubmed-90506362022-04-29 Computational simulation of anion binding association mechanisms contributing toward rotation of pyrrole rings in dipyrrolyldiketone BF(2) complexes Kobayashi, Osamu Kato, Tomoki Mashiko, Takako Haketa, Yohei Maeda, Hiromitsu Tachikawa, Masanori RSC Adv Chemistry Dipyrrolyldiketone BF(2) complexes have a characteristic association mechanism with anions; an anion is tightly captured by the NH bonding of the two rotated pyrrole rings and the CH bonding of the backbone in dipyrrolyldiketone BF(2) complexes. In order to elucidate this anion association mechanism in dipyrrolyldiketone BF(2) complexes, the relative stability of several conformers of the dipyrrolyldiketone BF(2) complex and anion complexes are initially calculated by quantum mechanical density functional theory (DFT). Second, molecular dynamics (MD) simulations were performed for systems comprising a dipyrrolyldiketone BF(2) complex and Cl(−) with several types of countercations in CH(2)Cl(2). From our DFT calculations, it was observed that isomerization could be classified by whether Cl(−) changes its position relative to the dipyrrolyldiketone BF(2) complex or not. From the MD simulations, we found the size effect of countercations: a large cation is released from dipyrrolyldiketone BF(2) complexes more frequently than smaller cations. Meanwhile, when Na(+) is employed as the cation, the formation of a seven-membered ring-like cluster suppresses both the isomerizations. Furthermore, MD simulations suggest that the presence of an anion is critical to stabilize the two rotated pyrrole rings. Hence, from our MD simulations, we have clearly found that the size of the cation affects the isomerization processes. The Royal Society of Chemistry 2020-03-24 /pmc/articles/PMC9050636/ /pubmed/35496591 http://dx.doi.org/10.1039/c9ra09285d Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by-nc/3.0/
spellingShingle Chemistry
Kobayashi, Osamu
Kato, Tomoki
Mashiko, Takako
Haketa, Yohei
Maeda, Hiromitsu
Tachikawa, Masanori
Computational simulation of anion binding association mechanisms contributing toward rotation of pyrrole rings in dipyrrolyldiketone BF(2) complexes
title Computational simulation of anion binding association mechanisms contributing toward rotation of pyrrole rings in dipyrrolyldiketone BF(2) complexes
title_full Computational simulation of anion binding association mechanisms contributing toward rotation of pyrrole rings in dipyrrolyldiketone BF(2) complexes
title_fullStr Computational simulation of anion binding association mechanisms contributing toward rotation of pyrrole rings in dipyrrolyldiketone BF(2) complexes
title_full_unstemmed Computational simulation of anion binding association mechanisms contributing toward rotation of pyrrole rings in dipyrrolyldiketone BF(2) complexes
title_short Computational simulation of anion binding association mechanisms contributing toward rotation of pyrrole rings in dipyrrolyldiketone BF(2) complexes
title_sort computational simulation of anion binding association mechanisms contributing toward rotation of pyrrole rings in dipyrrolyldiketone bf(2) complexes
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9050636/
https://www.ncbi.nlm.nih.gov/pubmed/35496591
http://dx.doi.org/10.1039/c9ra09285d
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