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Computational simulation of anion binding association mechanisms contributing toward rotation of pyrrole rings in dipyrrolyldiketone BF(2) complexes
Dipyrrolyldiketone BF(2) complexes have a characteristic association mechanism with anions; an anion is tightly captured by the NH bonding of the two rotated pyrrole rings and the CH bonding of the backbone in dipyrrolyldiketone BF(2) complexes. In order to elucidate this anion association mechanism...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society of Chemistry
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9050636/ https://www.ncbi.nlm.nih.gov/pubmed/35496591 http://dx.doi.org/10.1039/c9ra09285d |
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author | Kobayashi, Osamu Kato, Tomoki Mashiko, Takako Haketa, Yohei Maeda, Hiromitsu Tachikawa, Masanori |
author_facet | Kobayashi, Osamu Kato, Tomoki Mashiko, Takako Haketa, Yohei Maeda, Hiromitsu Tachikawa, Masanori |
author_sort | Kobayashi, Osamu |
collection | PubMed |
description | Dipyrrolyldiketone BF(2) complexes have a characteristic association mechanism with anions; an anion is tightly captured by the NH bonding of the two rotated pyrrole rings and the CH bonding of the backbone in dipyrrolyldiketone BF(2) complexes. In order to elucidate this anion association mechanism in dipyrrolyldiketone BF(2) complexes, the relative stability of several conformers of the dipyrrolyldiketone BF(2) complex and anion complexes are initially calculated by quantum mechanical density functional theory (DFT). Second, molecular dynamics (MD) simulations were performed for systems comprising a dipyrrolyldiketone BF(2) complex and Cl(−) with several types of countercations in CH(2)Cl(2). From our DFT calculations, it was observed that isomerization could be classified by whether Cl(−) changes its position relative to the dipyrrolyldiketone BF(2) complex or not. From the MD simulations, we found the size effect of countercations: a large cation is released from dipyrrolyldiketone BF(2) complexes more frequently than smaller cations. Meanwhile, when Na(+) is employed as the cation, the formation of a seven-membered ring-like cluster suppresses both the isomerizations. Furthermore, MD simulations suggest that the presence of an anion is critical to stabilize the two rotated pyrrole rings. Hence, from our MD simulations, we have clearly found that the size of the cation affects the isomerization processes. |
format | Online Article Text |
id | pubmed-9050636 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | The Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-90506362022-04-29 Computational simulation of anion binding association mechanisms contributing toward rotation of pyrrole rings in dipyrrolyldiketone BF(2) complexes Kobayashi, Osamu Kato, Tomoki Mashiko, Takako Haketa, Yohei Maeda, Hiromitsu Tachikawa, Masanori RSC Adv Chemistry Dipyrrolyldiketone BF(2) complexes have a characteristic association mechanism with anions; an anion is tightly captured by the NH bonding of the two rotated pyrrole rings and the CH bonding of the backbone in dipyrrolyldiketone BF(2) complexes. In order to elucidate this anion association mechanism in dipyrrolyldiketone BF(2) complexes, the relative stability of several conformers of the dipyrrolyldiketone BF(2) complex and anion complexes are initially calculated by quantum mechanical density functional theory (DFT). Second, molecular dynamics (MD) simulations were performed for systems comprising a dipyrrolyldiketone BF(2) complex and Cl(−) with several types of countercations in CH(2)Cl(2). From our DFT calculations, it was observed that isomerization could be classified by whether Cl(−) changes its position relative to the dipyrrolyldiketone BF(2) complex or not. From the MD simulations, we found the size effect of countercations: a large cation is released from dipyrrolyldiketone BF(2) complexes more frequently than smaller cations. Meanwhile, when Na(+) is employed as the cation, the formation of a seven-membered ring-like cluster suppresses both the isomerizations. Furthermore, MD simulations suggest that the presence of an anion is critical to stabilize the two rotated pyrrole rings. Hence, from our MD simulations, we have clearly found that the size of the cation affects the isomerization processes. The Royal Society of Chemistry 2020-03-24 /pmc/articles/PMC9050636/ /pubmed/35496591 http://dx.doi.org/10.1039/c9ra09285d Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by-nc/3.0/ |
spellingShingle | Chemistry Kobayashi, Osamu Kato, Tomoki Mashiko, Takako Haketa, Yohei Maeda, Hiromitsu Tachikawa, Masanori Computational simulation of anion binding association mechanisms contributing toward rotation of pyrrole rings in dipyrrolyldiketone BF(2) complexes |
title | Computational simulation of anion binding association mechanisms contributing toward rotation of pyrrole rings in dipyrrolyldiketone BF(2) complexes |
title_full | Computational simulation of anion binding association mechanisms contributing toward rotation of pyrrole rings in dipyrrolyldiketone BF(2) complexes |
title_fullStr | Computational simulation of anion binding association mechanisms contributing toward rotation of pyrrole rings in dipyrrolyldiketone BF(2) complexes |
title_full_unstemmed | Computational simulation of anion binding association mechanisms contributing toward rotation of pyrrole rings in dipyrrolyldiketone BF(2) complexes |
title_short | Computational simulation of anion binding association mechanisms contributing toward rotation of pyrrole rings in dipyrrolyldiketone BF(2) complexes |
title_sort | computational simulation of anion binding association mechanisms contributing toward rotation of pyrrole rings in dipyrrolyldiketone bf(2) complexes |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9050636/ https://www.ncbi.nlm.nih.gov/pubmed/35496591 http://dx.doi.org/10.1039/c9ra09285d |
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