Cargando…

A deep siamese neural network improves metagenome-assembled genomes in microbiome datasets across different environments

Metagenomic binning is the step in building metagenome-assembled genomes (MAGs) when sequences predicted to originate from the same genome are automatically grouped together. The most widely-used methods for binning are reference-independent, operating de novo and enable the recovery of genomes from...

Descripción completa

Detalles Bibliográficos
Autores principales:	Pan, Shaojun, Zhu, Chengkai, Zhao, Xing-Ming, Coelho, Luis Pedro
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2022
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9051138/ https://www.ncbi.nlm.nih.gov/pubmed/35484115 http://dx.doi.org/10.1038/s41467-022-29843-y

Ejemplares similares

metaMIC: reference-free misassembly identification and correction of de novo metagenomic assemblies
por: Lai, Senying, et al.
Publicado: (2022)

A Radio Environment Map Updating Mechanism Based on an Attention Mechanism and Siamese Neural Networks
por: Zhen, Pan, et al.
Publicado: (2022)

Macrel: antimicrobial peptide screening in genomes and metagenomes
por: Santos-Júnior, Célio Dias, et al.
Publicado: (2020)

Metagenomic assembled plasmids of the human microbiome vary across disease cohorts
por: Stockdale, S. R., et al.
Publicado: (2022)

Siamese Neural Networks for Class Activity Detection
por: Li, Hang, et al.
Publicado: (2020)

A Deep Siamese Convolution Neural Network for Multi-Class Classification of Alzheimer Disease
por: Mehmood, Atif, et al.
Publicado: (2020)

Synthetic feature pairs dataset and siamese convolutional model for image matching
por: Halmaoui, Houssam, et al.
Publicado: (2022)

MapCell: Learning a Comparative Cell Type Distance Metric With Siamese Neural Nets With Applications Toward Cell-Type Identification Across Experimental Datasets
por: Koh, Winston, et al.
Publicado: (2021)

Spherical: an iterative workflow for assembling metagenomic datasets
por: Hitch, Thomas C. A., et al.
Publicado: (2018)

Siamese Twins
por: Ponniah, S.
Publicado: (1942)

The Siamese Twins
Publicado: (1836)

The Siamese Teeth
Publicado: (1879)

The Siamese Twins
Publicado: (1941)

The Siamese Twins
Publicado: (1874)

ASNet: Auto-Augmented Siamese Neural Network for Action Recognition
por: Zhang, Yujia, et al.
Publicado: (2021)

Analysing Siamese Neural Network Architectures for Computing Name Similarity.
por: Vinden, Nicholas, et al.
Publicado: (2022)

The Siamese White Elephants
Publicado: (1882)

Four-way classification of Alzheimer’s disease using deep Siamese convolutional neural network with triplet-loss function
por: Hajamohideen, Faizal, et al.
Publicado: (2023)

A deep learning method for replicate-based analysis of chromosome conformation contacts using Siamese neural networks
por: Al-jibury, Ediem, et al.
Publicado: (2023)

A Siamese Neural Network for Non-Invasive Baggage Re-Identification
por: Mazzeo, Pier Luigi, et al.
Publicado: (2020)

MGMSN: Multi-Granularity Matching Model Based on Siamese Neural Network
por: Wang, Xin, et al.
Publicado: (2022)

Siamese Neural Network for Keystroke Dynamics-Based Authentication on Partial Passwords
por: Lis, Kamila, et al.
Publicado: (2023)

Draft Metagenome Sequences of the Sphagnum (Peat Moss) Microbiome from Ambient and Warmed Environments across Europe
por: Piatkowski, Bryan T., et al.
Publicado: (2022)

Using a Convolutional Siamese Network for Image-Based Plant Species Identification with Small Datasets
por: Figueroa-Mata, Geovanni, et al.
Publicado: (2020)

Metagenomic characterization of sphingomyelinase C in the microbiome of humans and environments
por: Jeon, Jehyun, et al.
Publicado: (2022)

Biliothorax in a Siamese cat
por: Wustefeld-Janssens, Brandan G., et al.
Publicado: (2011)

The Siamese Twins—Autopsy, Etc.
Publicado: (1874)

Siamese Recurrent Neural Network with a Self-Attention Mechanism for Bioactivity Prediction
por: Fernández-Llaneza, Daniel, et al.
Publicado: (2021)

Cross-domain few-shot learning based on pseudo-Siamese neural network
por: Gong, Yuxuan, et al.
Publicado: (2023)

Similarity-Based Virtual Screen Using Enhanced Siamese Deep Learning Methods
por: Altalib, Mohammed Khaldoon, et al.
Publicado: (2022)

Metagenome-assembled genomes uncover a global brackish microbiome
por: Hugerth, Luisa W., et al.
Publicado: (2015)

Functional Insights into the Kelp Microbiome from Metagenome-Assembled Genomes
por: Weigel, Brooke L., et al.
Publicado: (2022)

Dataset of shotgun metagenomic evaluation of lettuce (Lactuta sativa L.) rhizosphere microbiome
por: Babalola, Olubukola Oluranti, et al.
Publicado: (2023)

Metagenomes and Metagenome-Assembled Genomes from Microbiomes Metabolizing Thin Stillage from an Ethanol Biorefinery
por: Fortney, Nathaniel W., et al.
Publicado: (2022)

Siamese neural networks for continuous disease severity evaluation and change detection in medical imaging
por: Li, Matthew D., et al.
Publicado: (2020)

Matching sensor ontologies through siamese neural networks without using reference alignment
por: Xue, Xingsi, et al.
Publicado: (2021)

CovidExpert: A Triplet Siamese Neural Network framework for the detection of COVID-19
por: Ornob, Tareque Rahman, et al.
Publicado: (2023)

Accurate prediction of virus-host protein-protein interactions via a Siamese neural network using deep protein sequence embeddings
por: Madan, Sumit, et al.
Publicado: (2022)

A Case of Siamese Twins in Mayavaram
por: Iyer, H. Natesa
Publicado: (1916)

Report on an Unusual Case of "Siamese" Twins
por: O'Brien, C. W.
Publicado: (1915)

Cannot write session to /tmp/vufind_sessions/sess_u2n60efi5sn8fkp474vfs9be5b