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DFT Calculations for Mössbauer Properties on Dinuclear Center Models of the Resting Oxidized Cytochrome c Oxidase
Mössbauer isomer shift and quadrupole splitting properties have been calculated using the OLYP‐D3(BJ) density functional method on previously obtained (W.‐G. Han Du, et al., Inorg Chem. 2020, 59, 8906–8915) geometry optimized Fe(a3) (3+)−H(2)O−Cu(B) (2+) dinuclear center (DNC) clusters of the restin...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9054037/ https://www.ncbi.nlm.nih.gov/pubmed/35142420 http://dx.doi.org/10.1002/cphc.202100831 |
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author | Han Du, Wen‐Ge Götz, Andreas W. Noodleman, Louis |
author_facet | Han Du, Wen‐Ge Götz, Andreas W. Noodleman, Louis |
author_sort | Han Du, Wen‐Ge |
collection | PubMed |
description | Mössbauer isomer shift and quadrupole splitting properties have been calculated using the OLYP‐D3(BJ) density functional method on previously obtained (W.‐G. Han Du, et al., Inorg Chem. 2020, 59, 8906–8915) geometry optimized Fe(a3) (3+)−H(2)O−Cu(B) (2+) dinuclear center (DNC) clusters of the resting oxidized (O state) “as‐isolated” cytochrome c oxidase (CcO). The calculated results are highly consistent with the available experimental observations. The calculations have also shown that the structural heterogeneities of the O state DNCs implicated by the Mössbauer experiments are likely consequences of various factors, particularly the variable positions of the central H(2)O molecule between the Fe(a3) (3+) and Cu(B) (2+) sites in different DNCs, whether or not this central H(2)O molecule has H‐bonding interaction with another H(2)O molecule, the different spin states having similar energies for the Fe(a3) (3+) sites, and whether the Fe(a3) (3+) and Cu(B) (2+) sites are ferromagnetically or antiferromagnetically spin‐coupled. |
format | Online Article Text |
id | pubmed-9054037 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-90540372022-04-29 DFT Calculations for Mössbauer Properties on Dinuclear Center Models of the Resting Oxidized Cytochrome c Oxidase Han Du, Wen‐Ge Götz, Andreas W. Noodleman, Louis Chemphyschem Research Articles Mössbauer isomer shift and quadrupole splitting properties have been calculated using the OLYP‐D3(BJ) density functional method on previously obtained (W.‐G. Han Du, et al., Inorg Chem. 2020, 59, 8906–8915) geometry optimized Fe(a3) (3+)−H(2)O−Cu(B) (2+) dinuclear center (DNC) clusters of the resting oxidized (O state) “as‐isolated” cytochrome c oxidase (CcO). The calculated results are highly consistent with the available experimental observations. The calculations have also shown that the structural heterogeneities of the O state DNCs implicated by the Mössbauer experiments are likely consequences of various factors, particularly the variable positions of the central H(2)O molecule between the Fe(a3) (3+) and Cu(B) (2+) sites in different DNCs, whether or not this central H(2)O molecule has H‐bonding interaction with another H(2)O molecule, the different spin states having similar energies for the Fe(a3) (3+) sites, and whether the Fe(a3) (3+) and Cu(B) (2+) sites are ferromagnetically or antiferromagnetically spin‐coupled. John Wiley and Sons Inc. 2022-03-01 2022-04-05 /pmc/articles/PMC9054037/ /pubmed/35142420 http://dx.doi.org/10.1002/cphc.202100831 Text en © 2022 The Authors. ChemPhysChem published by Wiley-VCH GmbH https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Research Articles Han Du, Wen‐Ge Götz, Andreas W. Noodleman, Louis DFT Calculations for Mössbauer Properties on Dinuclear Center Models of the Resting Oxidized Cytochrome c Oxidase |
title | DFT Calculations for Mössbauer Properties on Dinuclear Center Models of the Resting Oxidized Cytochrome c Oxidase |
title_full | DFT Calculations for Mössbauer Properties on Dinuclear Center Models of the Resting Oxidized Cytochrome c Oxidase |
title_fullStr | DFT Calculations for Mössbauer Properties on Dinuclear Center Models of the Resting Oxidized Cytochrome c Oxidase |
title_full_unstemmed | DFT Calculations for Mössbauer Properties on Dinuclear Center Models of the Resting Oxidized Cytochrome c Oxidase |
title_short | DFT Calculations for Mössbauer Properties on Dinuclear Center Models of the Resting Oxidized Cytochrome c Oxidase |
title_sort | dft calculations for mössbauer properties on dinuclear center models of the resting oxidized cytochrome c oxidase |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9054037/ https://www.ncbi.nlm.nih.gov/pubmed/35142420 http://dx.doi.org/10.1002/cphc.202100831 |
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