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Insight into structural properties of polyethylene glycol monolaurate in water and alcohols from molecular dynamics studies
By means of molecular dynamics (MD) simulations, we explored the structural properties of polyethylene glycol monolaurate (PEGML) in water and in various aliphatic alcohols (methanol, ethanol, 2-propanol, 2-butanol, tert-butanol, and 1-pentanol). The PEGML and the alcohols were simulated using the o...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society of Chemistry
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9054503/ https://www.ncbi.nlm.nih.gov/pubmed/35516635 http://dx.doi.org/10.1039/c9ra09688d |
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author | Khoiroh, Ianatul Lee, Sze Ying Pirdashti, Mohsen Lee, Ming-Jer |
author_facet | Khoiroh, Ianatul Lee, Sze Ying Pirdashti, Mohsen Lee, Ming-Jer |
author_sort | Khoiroh, Ianatul |
collection | PubMed |
description | By means of molecular dynamics (MD) simulations, we explored the structural properties of polyethylene glycol monolaurate (PEGML) in water and in various aliphatic alcohols (methanol, ethanol, 2-propanol, 2-butanol, tert-butanol, and 1-pentanol). The PEGML and the alcohols were simulated using the optimized potentials for liquid simulations, all-atom (OPLS-AA) force field and water using the extended simple point charge (SPC/E) model. From the isothermal-isobaric (NPT, constant number of particles, constant pressure, and constant temperature) ensemble, we extracted the densities from the simulations and compared them with those from experimental results in order to confirm the validity of the selected force fields. The densities from MD simulations are in good agreement with the experimental values. To gain more insight into the nature of interactions between the PEGML and the solvent molecules, we analyzed the hydrogen-bonds, the electrostatic (Coulomb) interactions, and the van der Waals (Lennard-Jones) interaction energies extracted from MD simulations. The results were further strengthened by computing the solvation free energy by employing the free energy perturbation (FEP) approach. In this method, the free energy difference was computed by using the Bennet Acceptance Ratio (BAR) method. Moreover, the radial distribution functions were analyzed in order to gain more understanding of the solution behavior at the molecular level. |
format | Online Article Text |
id | pubmed-9054503 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | The Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-90545032022-05-04 Insight into structural properties of polyethylene glycol monolaurate in water and alcohols from molecular dynamics studies Khoiroh, Ianatul Lee, Sze Ying Pirdashti, Mohsen Lee, Ming-Jer RSC Adv Chemistry By means of molecular dynamics (MD) simulations, we explored the structural properties of polyethylene glycol monolaurate (PEGML) in water and in various aliphatic alcohols (methanol, ethanol, 2-propanol, 2-butanol, tert-butanol, and 1-pentanol). The PEGML and the alcohols were simulated using the optimized potentials for liquid simulations, all-atom (OPLS-AA) force field and water using the extended simple point charge (SPC/E) model. From the isothermal-isobaric (NPT, constant number of particles, constant pressure, and constant temperature) ensemble, we extracted the densities from the simulations and compared them with those from experimental results in order to confirm the validity of the selected force fields. The densities from MD simulations are in good agreement with the experimental values. To gain more insight into the nature of interactions between the PEGML and the solvent molecules, we analyzed the hydrogen-bonds, the electrostatic (Coulomb) interactions, and the van der Waals (Lennard-Jones) interaction energies extracted from MD simulations. The results were further strengthened by computing the solvation free energy by employing the free energy perturbation (FEP) approach. In this method, the free energy difference was computed by using the Bennet Acceptance Ratio (BAR) method. Moreover, the radial distribution functions were analyzed in order to gain more understanding of the solution behavior at the molecular level. The Royal Society of Chemistry 2020-06-08 /pmc/articles/PMC9054503/ /pubmed/35516635 http://dx.doi.org/10.1039/c9ra09688d Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by/3.0/ |
spellingShingle | Chemistry Khoiroh, Ianatul Lee, Sze Ying Pirdashti, Mohsen Lee, Ming-Jer Insight into structural properties of polyethylene glycol monolaurate in water and alcohols from molecular dynamics studies |
title | Insight into structural properties of polyethylene glycol monolaurate in water and alcohols from molecular dynamics studies |
title_full | Insight into structural properties of polyethylene glycol monolaurate in water and alcohols from molecular dynamics studies |
title_fullStr | Insight into structural properties of polyethylene glycol monolaurate in water and alcohols from molecular dynamics studies |
title_full_unstemmed | Insight into structural properties of polyethylene glycol monolaurate in water and alcohols from molecular dynamics studies |
title_short | Insight into structural properties of polyethylene glycol monolaurate in water and alcohols from molecular dynamics studies |
title_sort | insight into structural properties of polyethylene glycol monolaurate in water and alcohols from molecular dynamics studies |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9054503/ https://www.ncbi.nlm.nih.gov/pubmed/35516635 http://dx.doi.org/10.1039/c9ra09688d |
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