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Regulation of chromatin accessibility by the histone chaperone CAF-1 sustains lineage fidelity

Cell fate commitment is driven by dynamic changes in chromatin architecture and activity of lineage-specific transcription factors (TFs). The chromatin assembly factor-1 (CAF-1) is a histone chaperone that regulates chromatin architecture by facilitating nucleosome assembly during DNA replication. A...

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Autores principales: Franklin, Reuben, Guo, Yiming, He, Shiyang, Chen, Meijuan, Ji, Fei, Zhou, Xinyue, Frankhouser, David, Do, Brian T., Chiem, Carmen, Jang, Mihyun, Blanco, M. Andres, Vander Heiden, Matthew G., Rockne, Russell C., Ninova, Maria, Sykes, David B., Hochedlinger, Konrad, Lu, Rui, Sadreyev, Ruslan I., Murn, Jernej, Volk, Andrew, Cheloufi, Sihem
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9054786/
https://www.ncbi.nlm.nih.gov/pubmed/35487911
http://dx.doi.org/10.1038/s41467-022-29730-6
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author Franklin, Reuben
Guo, Yiming
He, Shiyang
Chen, Meijuan
Ji, Fei
Zhou, Xinyue
Frankhouser, David
Do, Brian T.
Chiem, Carmen
Jang, Mihyun
Blanco, M. Andres
Vander Heiden, Matthew G.
Rockne, Russell C.
Ninova, Maria
Sykes, David B.
Hochedlinger, Konrad
Lu, Rui
Sadreyev, Ruslan I.
Murn, Jernej
Volk, Andrew
Cheloufi, Sihem
author_facet Franklin, Reuben
Guo, Yiming
He, Shiyang
Chen, Meijuan
Ji, Fei
Zhou, Xinyue
Frankhouser, David
Do, Brian T.
Chiem, Carmen
Jang, Mihyun
Blanco, M. Andres
Vander Heiden, Matthew G.
Rockne, Russell C.
Ninova, Maria
Sykes, David B.
Hochedlinger, Konrad
Lu, Rui
Sadreyev, Ruslan I.
Murn, Jernej
Volk, Andrew
Cheloufi, Sihem
author_sort Franklin, Reuben
collection PubMed
description Cell fate commitment is driven by dynamic changes in chromatin architecture and activity of lineage-specific transcription factors (TFs). The chromatin assembly factor-1 (CAF-1) is a histone chaperone that regulates chromatin architecture by facilitating nucleosome assembly during DNA replication. Accumulating evidence supports a substantial role of CAF-1 in cell fate maintenance, but the mechanisms by which CAF-1 restricts lineage choice remain poorly understood. Here, we investigate how CAF-1 influences chromatin dynamics and TF activity during lineage differentiation. We show that CAF-1 suppression triggers rapid differentiation of myeloid stem and progenitor cells into a mixed lineage state. We find that CAF-1 sustains lineage fidelity by controlling chromatin accessibility at specific loci, and limiting the binding of ELF1 TF at newly-accessible diverging regulatory elements. Together, our findings decipher key traits of chromatin accessibility that sustain lineage integrity and point to a powerful strategy for dissecting transcriptional circuits central to cell fate commitment.
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spelling pubmed-90547862022-05-01 Regulation of chromatin accessibility by the histone chaperone CAF-1 sustains lineage fidelity Franklin, Reuben Guo, Yiming He, Shiyang Chen, Meijuan Ji, Fei Zhou, Xinyue Frankhouser, David Do, Brian T. Chiem, Carmen Jang, Mihyun Blanco, M. Andres Vander Heiden, Matthew G. Rockne, Russell C. Ninova, Maria Sykes, David B. Hochedlinger, Konrad Lu, Rui Sadreyev, Ruslan I. Murn, Jernej Volk, Andrew Cheloufi, Sihem Nat Commun Article Cell fate commitment is driven by dynamic changes in chromatin architecture and activity of lineage-specific transcription factors (TFs). The chromatin assembly factor-1 (CAF-1) is a histone chaperone that regulates chromatin architecture by facilitating nucleosome assembly during DNA replication. Accumulating evidence supports a substantial role of CAF-1 in cell fate maintenance, but the mechanisms by which CAF-1 restricts lineage choice remain poorly understood. Here, we investigate how CAF-1 influences chromatin dynamics and TF activity during lineage differentiation. We show that CAF-1 suppression triggers rapid differentiation of myeloid stem and progenitor cells into a mixed lineage state. We find that CAF-1 sustains lineage fidelity by controlling chromatin accessibility at specific loci, and limiting the binding of ELF1 TF at newly-accessible diverging regulatory elements. Together, our findings decipher key traits of chromatin accessibility that sustain lineage integrity and point to a powerful strategy for dissecting transcriptional circuits central to cell fate commitment. Nature Publishing Group UK 2022-04-29 /pmc/articles/PMC9054786/ /pubmed/35487911 http://dx.doi.org/10.1038/s41467-022-29730-6 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Franklin, Reuben
Guo, Yiming
He, Shiyang
Chen, Meijuan
Ji, Fei
Zhou, Xinyue
Frankhouser, David
Do, Brian T.
Chiem, Carmen
Jang, Mihyun
Blanco, M. Andres
Vander Heiden, Matthew G.
Rockne, Russell C.
Ninova, Maria
Sykes, David B.
Hochedlinger, Konrad
Lu, Rui
Sadreyev, Ruslan I.
Murn, Jernej
Volk, Andrew
Cheloufi, Sihem
Regulation of chromatin accessibility by the histone chaperone CAF-1 sustains lineage fidelity
title Regulation of chromatin accessibility by the histone chaperone CAF-1 sustains lineage fidelity
title_full Regulation of chromatin accessibility by the histone chaperone CAF-1 sustains lineage fidelity
title_fullStr Regulation of chromatin accessibility by the histone chaperone CAF-1 sustains lineage fidelity
title_full_unstemmed Regulation of chromatin accessibility by the histone chaperone CAF-1 sustains lineage fidelity
title_short Regulation of chromatin accessibility by the histone chaperone CAF-1 sustains lineage fidelity
title_sort regulation of chromatin accessibility by the histone chaperone caf-1 sustains lineage fidelity
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9054786/
https://www.ncbi.nlm.nih.gov/pubmed/35487911
http://dx.doi.org/10.1038/s41467-022-29730-6
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