Cargando…

Plant Public RNA‐seq Database: a comprehensive online database for expression analysis of ~45 000 plant public RNA‐Seq libraries

Detalles Bibliográficos
Autores principales:	Yu, Yiming, Zhang, Hong, Long, Yanping, Shu, Yi, Zhai, Jixian
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	John Wiley and Sons Inc. 2022
Materias:	Brief Communications
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9055819/ https://www.ncbi.nlm.nih.gov/pubmed/35218297 http://dx.doi.org/10.1111/pbi.13798

Ejemplares similares

AgriSeqDB: an online RNA-Seq database for functional studies of agriculturally relevant plant species
por: Robinson, Andrew J., et al.
Publicado: (2018)

FlsnRNA-seq: protoplasting-free full-length single-nucleus RNA profiling in plants
por: Long, Yanping, et al.
Publicado: (2021)

Plant stress RNA-seq Nexus: a stress-specific transcriptome database in plant cells
por: Li, Jian-Rong, et al.
Publicado: (2018)

BnTIR: an online transcriptome platform for exploring RNA‐seq libraries for oil crop Brassica napus
por: Liu, Dongxu, et al.
Publicado: (2021)

RNA-seq and ChIP-seq as Complementary Approaches for Comprehension of Plant Transcriptional Regulatory Mechanism
por: Muhammad, Isiaka Ibrahim, et al.
Publicado: (2019)

Hipposeq: a comprehensive RNA-seq database of gene expression in hippocampal principal neurons
por: Cembrowski, Mark S, et al.
Publicado: (2016)

GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases
por: Oh, Sehyun, et al.
Publicado: (2022)

RNA-Seq for Plant Pathogenic Bacteria
por: Kimbrel, Jeffrey A., et al.
Publicado: (2011)

PlantExp: a platform for exploration of gene expression and alternative splicing based on public plant RNA-seq samples
por: Liu, Jinding, et al.
Publicado: (2022)

WheatExp: an RNA-seq expression database for polyploid wheat
por: Pearce, Stephen, et al.
Publicado: (2015)

CLIPdb: a CLIP-seq database for protein-RNA interactions
por: Yang, Yu-Cheng T, et al.
Publicado: (2015)

SCAD-Brain: a public database of single cell RNA-seq data in human and mouse brains with Alzheimer's disease
por: Li, Xin-Wen, et al.
Publicado: (2023)

MicroRNA discovery by similarity search to a database of RNA-seq profiles
por: Pundhir, Sachin, et al.
Publicado: (2013)

Lasy-Seq: a high-throughput library preparation method for RNA-Seq and its application in the analysis of plant responses to fluctuating temperatures
por: Kamitani, Mari, et al.
Publicado: (2019)

Catalyzing plant science research with RNA-seq
por: Martin, Laetitia B. B., et al.
Publicado: (2013)

PlantCADB: A Comprehensive Plant Chromatin Accessibility Database
por: Ding, Ke, et al.
Publicado: (2023)

Mr.Vc: a database of microarray and RNA-seq of Vibrio cholerae
por: Zhang, Zhiyuan, et al.
Publicado: (2019)

Plant editosome database: a curated database of RNA editosome in plants
por: Li, Man, et al.
Publicado: (2019)

The Rhododendron Plant Genome Database (RPGD): a comprehensive online omics database for Rhododendron
por: Liu, Ningyawen, et al.
Publicado: (2021)

Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database
por: Zappia, Luke, et al.
Publicado: (2018)

Design, execution, and interpretation of plant RNA-seq analyses
por: Upton, Racheal N., et al.
Publicado: (2023)

Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database
por: Fortriede, Joshua D, et al.
Publicado: (2020)

YM500: a small RNA sequencing (smRNA-seq) database for microRNA research
por: Cheng, Wei-Chung, et al.
Publicado: (2013)

scREAD: A Single-Cell RNA-Seq Database for Alzheimer's Disease
por: Jiang, Jing, et al.
Publicado: (2020)

starBase: a database for exploring microRNA–mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data
por: Yang, Jian-Hua, et al.
Publicado: (2011)

Combined BSA-Seq Based Mapping and RNA-Seq Profiling Reveal Candidate Genes Associated with Plant Architecture in Brassica napus
por: Ye, Shenhua, et al.
Publicado: (2022)

PMRD: plant microRNA database
por: Zhang, Zhenhai, et al.
Publicado: (2010)

ISOdb: A Comprehensive Database of Full-Length Isoforms Generated by Iso-Seq
por: Xie, Shang-Qian, et al.
Publicado: (2018)

Assessing the consistency of public human tissue RNA-seq data sets
por: Danielsson, Frida, et al.
Publicado: (2015)

Improving the value of public RNA-seq expression data by phenotype prediction
por: Ellis, Shannon E, et al.
Publicado: (2018)

Grape-RNA: A Database for the Collection, Evaluation, Treatment, and Data Sharing of Grape RNA-Seq Datasets
por: Wang, Yi, et al.
Publicado: (2020)

Haemopedia RNA-seq: a database of gene expression during haematopoiesis in mice and humans
por: Choi, Jarny, et al.
Publicado: (2019)

DualSeqDB: the host–pathogen dual RNA sequencing database for infection processes
por: Macho Rendón, Javier, et al.
Publicado: (2020)

Benchmarking of microbiome detection tools on RNA-seq synthetic databases according to diverse conditions
por: Jurado-Rueda, Francisco, et al.
Publicado: (2023)

ssREAD: A Single-cell and Spatial RNA-seq Database for Alzheimer’s Disease
por: Wang, Cankun, et al.
Publicado: (2023)

Bias in RNA-seq Library Preparation: Current Challenges and Solutions
por: Shi, Huajuan, et al.
Publicado: (2021)

SeedSeq: Off-Target Transcriptome Database
por: Das, Shaoli, et al.
Publicado: (2013)

A web-based database server using 43,710 public RNA-seq samples for the analysis of gene expression and alternative splicing in livestock animals
por: Liu, Jinding, et al.
Publicado: (2022)

Exploring the expression patterns of palmitoylating and de-palmitoylating enzymes in the mouse brain using the curated RNA-seq database BrainPalmSeq
por: Wild, Angela R, et al.
Publicado: (2022)

Influence of RNA extraction methods and library selection schemes on RNA-seq data
por: Sultan, Marc, et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_qppopn8i89sljrmqfdk15f3e4t