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Genome sequence data of Lactiplantibacillus plantarum IMI 507028
Here, we report the genome sequencing data for the fermented milk isolate, Lactiplantibacillus plantarum (L. plantarum) IMI 507028. The Bioproject, SRA, and GenBank data were deposited at NCBI under accession numbers PRJNA801616, SRR18323693, and JAKMAX000000000, respectively. The size of the genome...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9062256/ https://www.ncbi.nlm.nih.gov/pubmed/35515993 http://dx.doi.org/10.1016/j.dib.2022.108190 |
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author | Nikodinoska, Ivana Makkonen, Jenny Blande, Daniel Moran, Colm |
author_facet | Nikodinoska, Ivana Makkonen, Jenny Blande, Daniel Moran, Colm |
author_sort | Nikodinoska, Ivana |
collection | PubMed |
description | Here, we report the genome sequencing data for the fermented milk isolate, Lactiplantibacillus plantarum (L. plantarum) IMI 507028. The Bioproject, SRA, and GenBank data were deposited at NCBI under accession numbers PRJNA801616, SRR18323693, and JAKMAX000000000, respectively. The size of the genome was 3,231,321 bp, with a GC% of 44.52. Before sequence trimming, the genome contained 40 contigs, in which 35 contigs were annotated, revealing 2937 coding sequences out of 3052 total genes. The strain was identified as L. plantarum with an average nucleotide identity (ANI) value of 99.9922% between IMI 507028 and L. plantarum JDM1. Genes related to antimicrobial resistance or pathogenic factors were not found during screening. |
format | Online Article Text |
id | pubmed-9062256 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-90622562022-05-04 Genome sequence data of Lactiplantibacillus plantarum IMI 507028 Nikodinoska, Ivana Makkonen, Jenny Blande, Daniel Moran, Colm Data Brief Data Article Here, we report the genome sequencing data for the fermented milk isolate, Lactiplantibacillus plantarum (L. plantarum) IMI 507028. The Bioproject, SRA, and GenBank data were deposited at NCBI under accession numbers PRJNA801616, SRR18323693, and JAKMAX000000000, respectively. The size of the genome was 3,231,321 bp, with a GC% of 44.52. Before sequence trimming, the genome contained 40 contigs, in which 35 contigs were annotated, revealing 2937 coding sequences out of 3052 total genes. The strain was identified as L. plantarum with an average nucleotide identity (ANI) value of 99.9922% between IMI 507028 and L. plantarum JDM1. Genes related to antimicrobial resistance or pathogenic factors were not found during screening. Elsevier 2022-04-19 /pmc/articles/PMC9062256/ /pubmed/35515993 http://dx.doi.org/10.1016/j.dib.2022.108190 Text en © 2022 The Author(s). Published by Elsevier Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data Article Nikodinoska, Ivana Makkonen, Jenny Blande, Daniel Moran, Colm Genome sequence data of Lactiplantibacillus plantarum IMI 507028 |
title | Genome sequence data of Lactiplantibacillus plantarum IMI 507028 |
title_full | Genome sequence data of Lactiplantibacillus plantarum IMI 507028 |
title_fullStr | Genome sequence data of Lactiplantibacillus plantarum IMI 507028 |
title_full_unstemmed | Genome sequence data of Lactiplantibacillus plantarum IMI 507028 |
title_short | Genome sequence data of Lactiplantibacillus plantarum IMI 507028 |
title_sort | genome sequence data of lactiplantibacillus plantarum imi 507028 |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9062256/ https://www.ncbi.nlm.nih.gov/pubmed/35515993 http://dx.doi.org/10.1016/j.dib.2022.108190 |
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