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Validation of a computational chain from PET Monte Carlo simulations to reconstructed images
The study aimed to create a pipeline from Monte Carlo simulated projections of a Gate PET system to reconstructed images. The PET system was modelled after the GE Discovery MI (DMI) PET/CT, and the simulated projections were reconstructed with the stand-alone reconstruction software CASToR. Attenuat...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9062260/ https://www.ncbi.nlm.nih.gov/pubmed/35520630 http://dx.doi.org/10.1016/j.heliyon.2022.e09316 |
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author | Kalaitzidis, Philip Gustafsson, Johan Hindorf, Cecilia Ljungberg, Michael |
author_facet | Kalaitzidis, Philip Gustafsson, Johan Hindorf, Cecilia Ljungberg, Michael |
author_sort | Kalaitzidis, Philip |
collection | PubMed |
description | The study aimed to create a pipeline from Monte Carlo simulated projections of a Gate PET system to reconstructed images. The PET system was modelled after the GE Discovery MI (DMI) PET/CT, and the simulated projections were reconstructed with the stand-alone reconstruction software CASToR. Attenuation correction, normalisation calibration, random estimation, and scatter estimation for the simulations were computed with in-house programs. The pipeline was compared in both projection and image space with data acquired on a clinical DMI and reconstructed with GE's off-line PET reconstruction software (PET Toolbox) and CASToR. The simulated and measured data were compared for the number of prompt coincidences, scatter fraction, contrast recovery coefficient (CRC), signal-to-noise ratio (SNR), background variability, residual lung error, and image profiles. A slight discrepancy was noted in the projection space, but good agreements were generally achieved in image space between simulated and measured data. The CRC was found to be 81 % for Gate – CASToR, 84 % for GE – CASToR, and 84 % for GE - PET Toolbox for the largest sphere of the NEMA image quality (IQ) phantom, and the SNR was found to be 98 for Gate – CASToR, 91 for GE – CASToR, and 93 for GE – PET Toolbox. Profiles drawn over the spheres for the NEMA IQ phantom and the Data Spectrum (DS) phantom show a good match between measurement and simulation. The results indicate feasibility to utilise the pipeline as a tool for off-line simulation-based studies. A complete pipeline introduces possibilities to study the impact of single parameters in the whole chain from simulation to reconstructed images. |
format | Online Article Text |
id | pubmed-9062260 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-90622602022-05-04 Validation of a computational chain from PET Monte Carlo simulations to reconstructed images Kalaitzidis, Philip Gustafsson, Johan Hindorf, Cecilia Ljungberg, Michael Heliyon Research Article The study aimed to create a pipeline from Monte Carlo simulated projections of a Gate PET system to reconstructed images. The PET system was modelled after the GE Discovery MI (DMI) PET/CT, and the simulated projections were reconstructed with the stand-alone reconstruction software CASToR. Attenuation correction, normalisation calibration, random estimation, and scatter estimation for the simulations were computed with in-house programs. The pipeline was compared in both projection and image space with data acquired on a clinical DMI and reconstructed with GE's off-line PET reconstruction software (PET Toolbox) and CASToR. The simulated and measured data were compared for the number of prompt coincidences, scatter fraction, contrast recovery coefficient (CRC), signal-to-noise ratio (SNR), background variability, residual lung error, and image profiles. A slight discrepancy was noted in the projection space, but good agreements were generally achieved in image space between simulated and measured data. The CRC was found to be 81 % for Gate – CASToR, 84 % for GE – CASToR, and 84 % for GE - PET Toolbox for the largest sphere of the NEMA image quality (IQ) phantom, and the SNR was found to be 98 for Gate – CASToR, 91 for GE – CASToR, and 93 for GE – PET Toolbox. Profiles drawn over the spheres for the NEMA IQ phantom and the Data Spectrum (DS) phantom show a good match between measurement and simulation. The results indicate feasibility to utilise the pipeline as a tool for off-line simulation-based studies. A complete pipeline introduces possibilities to study the impact of single parameters in the whole chain from simulation to reconstructed images. Elsevier 2022-04-21 /pmc/articles/PMC9062260/ /pubmed/35520630 http://dx.doi.org/10.1016/j.heliyon.2022.e09316 Text en © 2022 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Research Article Kalaitzidis, Philip Gustafsson, Johan Hindorf, Cecilia Ljungberg, Michael Validation of a computational chain from PET Monte Carlo simulations to reconstructed images |
title | Validation of a computational chain from PET Monte Carlo simulations to reconstructed images |
title_full | Validation of a computational chain from PET Monte Carlo simulations to reconstructed images |
title_fullStr | Validation of a computational chain from PET Monte Carlo simulations to reconstructed images |
title_full_unstemmed | Validation of a computational chain from PET Monte Carlo simulations to reconstructed images |
title_short | Validation of a computational chain from PET Monte Carlo simulations to reconstructed images |
title_sort | validation of a computational chain from pet monte carlo simulations to reconstructed images |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9062260/ https://www.ncbi.nlm.nih.gov/pubmed/35520630 http://dx.doi.org/10.1016/j.heliyon.2022.e09316 |
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