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Soil microbial diversity and functional profiling of a tropical rainforest of a highly dissected low hill from the upper Itaya river basin revealed by analysis of shotgun metagenomics sequencing data

The tropical rainforest of a highly dissected low hill from the upper Itaya river basin belongs to the western Amazonia region. Some investigations on the biodiversity of these rainforests were more focused on animals and plants diversity. The soils of this region are composed of moderately fertile...

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Autores principales: Cobos, Marianela, Estela, Segundo L., Rodríguez, Hicler N., Castro, Carlos G., Grandez, Miguel, Castro, Juan C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9062436/
https://www.ncbi.nlm.nih.gov/pubmed/35515981
http://dx.doi.org/10.1016/j.dib.2022.108205
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author Cobos, Marianela
Estela, Segundo L.
Rodríguez, Hicler N.
Castro, Carlos G.
Grandez, Miguel
Castro, Juan C.
author_facet Cobos, Marianela
Estela, Segundo L.
Rodríguez, Hicler N.
Castro, Carlos G.
Grandez, Miguel
Castro, Juan C.
author_sort Cobos, Marianela
collection PubMed
description The tropical rainforest of a highly dissected low hill from the upper Itaya river basin belongs to the western Amazonia region. Some investigations on the biodiversity of these rainforests were more focused on animals and plants diversity. The soils of this region are composed of moderately fertile sediments deposited recently from the initiation of the Andean orogenesis in the Miocene until now. However, scientific information about the soil microbial and functional diversity is still missing. This report presents shotgun metagenomics sequencing data from soils of this rainforest type. A composite loamy soil sample was collected from a primary forest, and metagenomic DNA was purified with standardized methods. Furthermore, libraries were prepared and paired-end sequenced on the Illumina NextSeq 550 platform. Raw Illumina paired-end reads have been uploaded and analysed in the Metagenomics RAST server (MG-RAST). The raw sequence data in fastq format is available at NCBI's Sequence Read Archive (SRA) with accession number SRX12846710.
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spelling pubmed-90624362022-05-04 Soil microbial diversity and functional profiling of a tropical rainforest of a highly dissected low hill from the upper Itaya river basin revealed by analysis of shotgun metagenomics sequencing data Cobos, Marianela Estela, Segundo L. Rodríguez, Hicler N. Castro, Carlos G. Grandez, Miguel Castro, Juan C. Data Brief Data Article The tropical rainforest of a highly dissected low hill from the upper Itaya river basin belongs to the western Amazonia region. Some investigations on the biodiversity of these rainforests were more focused on animals and plants diversity. The soils of this region are composed of moderately fertile sediments deposited recently from the initiation of the Andean orogenesis in the Miocene until now. However, scientific information about the soil microbial and functional diversity is still missing. This report presents shotgun metagenomics sequencing data from soils of this rainforest type. A composite loamy soil sample was collected from a primary forest, and metagenomic DNA was purified with standardized methods. Furthermore, libraries were prepared and paired-end sequenced on the Illumina NextSeq 550 platform. Raw Illumina paired-end reads have been uploaded and analysed in the Metagenomics RAST server (MG-RAST). The raw sequence data in fastq format is available at NCBI's Sequence Read Archive (SRA) with accession number SRX12846710. Elsevier 2022-04-23 /pmc/articles/PMC9062436/ /pubmed/35515981 http://dx.doi.org/10.1016/j.dib.2022.108205 Text en © 2022 The Authors. Published by Elsevier Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Cobos, Marianela
Estela, Segundo L.
Rodríguez, Hicler N.
Castro, Carlos G.
Grandez, Miguel
Castro, Juan C.
Soil microbial diversity and functional profiling of a tropical rainforest of a highly dissected low hill from the upper Itaya river basin revealed by analysis of shotgun metagenomics sequencing data
title Soil microbial diversity and functional profiling of a tropical rainforest of a highly dissected low hill from the upper Itaya river basin revealed by analysis of shotgun metagenomics sequencing data
title_full Soil microbial diversity and functional profiling of a tropical rainforest of a highly dissected low hill from the upper Itaya river basin revealed by analysis of shotgun metagenomics sequencing data
title_fullStr Soil microbial diversity and functional profiling of a tropical rainforest of a highly dissected low hill from the upper Itaya river basin revealed by analysis of shotgun metagenomics sequencing data
title_full_unstemmed Soil microbial diversity and functional profiling of a tropical rainforest of a highly dissected low hill from the upper Itaya river basin revealed by analysis of shotgun metagenomics sequencing data
title_short Soil microbial diversity and functional profiling of a tropical rainforest of a highly dissected low hill from the upper Itaya river basin revealed by analysis of shotgun metagenomics sequencing data
title_sort soil microbial diversity and functional profiling of a tropical rainforest of a highly dissected low hill from the upper itaya river basin revealed by analysis of shotgun metagenomics sequencing data
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9062436/
https://www.ncbi.nlm.nih.gov/pubmed/35515981
http://dx.doi.org/10.1016/j.dib.2022.108205
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