Cargando…
Soil microbial diversity and functional profiling of a tropical rainforest of a highly dissected low hill from the upper Itaya river basin revealed by analysis of shotgun metagenomics sequencing data
The tropical rainforest of a highly dissected low hill from the upper Itaya river basin belongs to the western Amazonia region. Some investigations on the biodiversity of these rainforests were more focused on animals and plants diversity. The soils of this region are composed of moderately fertile...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9062436/ https://www.ncbi.nlm.nih.gov/pubmed/35515981 http://dx.doi.org/10.1016/j.dib.2022.108205 |
_version_ | 1784698941206429696 |
---|---|
author | Cobos, Marianela Estela, Segundo L. Rodríguez, Hicler N. Castro, Carlos G. Grandez, Miguel Castro, Juan C. |
author_facet | Cobos, Marianela Estela, Segundo L. Rodríguez, Hicler N. Castro, Carlos G. Grandez, Miguel Castro, Juan C. |
author_sort | Cobos, Marianela |
collection | PubMed |
description | The tropical rainforest of a highly dissected low hill from the upper Itaya river basin belongs to the western Amazonia region. Some investigations on the biodiversity of these rainforests were more focused on animals and plants diversity. The soils of this region are composed of moderately fertile sediments deposited recently from the initiation of the Andean orogenesis in the Miocene until now. However, scientific information about the soil microbial and functional diversity is still missing. This report presents shotgun metagenomics sequencing data from soils of this rainforest type. A composite loamy soil sample was collected from a primary forest, and metagenomic DNA was purified with standardized methods. Furthermore, libraries were prepared and paired-end sequenced on the Illumina NextSeq 550 platform. Raw Illumina paired-end reads have been uploaded and analysed in the Metagenomics RAST server (MG-RAST). The raw sequence data in fastq format is available at NCBI's Sequence Read Archive (SRA) with accession number SRX12846710. |
format | Online Article Text |
id | pubmed-9062436 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-90624362022-05-04 Soil microbial diversity and functional profiling of a tropical rainforest of a highly dissected low hill from the upper Itaya river basin revealed by analysis of shotgun metagenomics sequencing data Cobos, Marianela Estela, Segundo L. Rodríguez, Hicler N. Castro, Carlos G. Grandez, Miguel Castro, Juan C. Data Brief Data Article The tropical rainforest of a highly dissected low hill from the upper Itaya river basin belongs to the western Amazonia region. Some investigations on the biodiversity of these rainforests were more focused on animals and plants diversity. The soils of this region are composed of moderately fertile sediments deposited recently from the initiation of the Andean orogenesis in the Miocene until now. However, scientific information about the soil microbial and functional diversity is still missing. This report presents shotgun metagenomics sequencing data from soils of this rainforest type. A composite loamy soil sample was collected from a primary forest, and metagenomic DNA was purified with standardized methods. Furthermore, libraries were prepared and paired-end sequenced on the Illumina NextSeq 550 platform. Raw Illumina paired-end reads have been uploaded and analysed in the Metagenomics RAST server (MG-RAST). The raw sequence data in fastq format is available at NCBI's Sequence Read Archive (SRA) with accession number SRX12846710. Elsevier 2022-04-23 /pmc/articles/PMC9062436/ /pubmed/35515981 http://dx.doi.org/10.1016/j.dib.2022.108205 Text en © 2022 The Authors. Published by Elsevier Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data Article Cobos, Marianela Estela, Segundo L. Rodríguez, Hicler N. Castro, Carlos G. Grandez, Miguel Castro, Juan C. Soil microbial diversity and functional profiling of a tropical rainforest of a highly dissected low hill from the upper Itaya river basin revealed by analysis of shotgun metagenomics sequencing data |
title | Soil microbial diversity and functional profiling of a tropical rainforest of a highly dissected low hill from the upper Itaya river basin revealed by analysis of shotgun metagenomics sequencing data |
title_full | Soil microbial diversity and functional profiling of a tropical rainforest of a highly dissected low hill from the upper Itaya river basin revealed by analysis of shotgun metagenomics sequencing data |
title_fullStr | Soil microbial diversity and functional profiling of a tropical rainforest of a highly dissected low hill from the upper Itaya river basin revealed by analysis of shotgun metagenomics sequencing data |
title_full_unstemmed | Soil microbial diversity and functional profiling of a tropical rainforest of a highly dissected low hill from the upper Itaya river basin revealed by analysis of shotgun metagenomics sequencing data |
title_short | Soil microbial diversity and functional profiling of a tropical rainforest of a highly dissected low hill from the upper Itaya river basin revealed by analysis of shotgun metagenomics sequencing data |
title_sort | soil microbial diversity and functional profiling of a tropical rainforest of a highly dissected low hill from the upper itaya river basin revealed by analysis of shotgun metagenomics sequencing data |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9062436/ https://www.ncbi.nlm.nih.gov/pubmed/35515981 http://dx.doi.org/10.1016/j.dib.2022.108205 |
work_keys_str_mv | AT cobosmarianela soilmicrobialdiversityandfunctionalprofilingofatropicalrainforestofahighlydissectedlowhillfromtheupperitayariverbasinrevealedbyanalysisofshotgunmetagenomicssequencingdata AT estelasegundol soilmicrobialdiversityandfunctionalprofilingofatropicalrainforestofahighlydissectedlowhillfromtheupperitayariverbasinrevealedbyanalysisofshotgunmetagenomicssequencingdata AT rodriguezhiclern soilmicrobialdiversityandfunctionalprofilingofatropicalrainforestofahighlydissectedlowhillfromtheupperitayariverbasinrevealedbyanalysisofshotgunmetagenomicssequencingdata AT castrocarlosg soilmicrobialdiversityandfunctionalprofilingofatropicalrainforestofahighlydissectedlowhillfromtheupperitayariverbasinrevealedbyanalysisofshotgunmetagenomicssequencingdata AT grandezmiguel soilmicrobialdiversityandfunctionalprofilingofatropicalrainforestofahighlydissectedlowhillfromtheupperitayariverbasinrevealedbyanalysisofshotgunmetagenomicssequencingdata AT castrojuanc soilmicrobialdiversityandfunctionalprofilingofatropicalrainforestofahighlydissectedlowhillfromtheupperitayariverbasinrevealedbyanalysisofshotgunmetagenomicssequencingdata |